PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462899233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 16903.6 Da PI: 11.281 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.6 | 7.3e-09 | 90 | 122 | 1 | 32 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfs 32 + y+GVr+++ +g+Wv+eIr+p++n+ +r +r s 462899233 90 PSYRGVRRRS-WGKWVSEIREPRKNCrRRrRRPS 122 57*****887.***********999974436655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-4 | 90 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-5 | 91 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-8 | 91 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.679 | 91 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MEADASHAPT TSSSFSSSPL ANGAAQELSK NSKPATTTKR KRASSPDSEE IETNTANGHG 60 EESSSCCTTE DNNNNKEAQA ATRRSGFKHP SYRGVRRRSW GKWVSEIREP RKNCRRRRRR 120 PSCRKRPAAR RPCTPAARET RCSTCRTFSW T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 117 | RRRSWGKWVSEIREPRKNCRRRR |
2 | 110 | 119 | RKNCRRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462899233 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT260118 | 8e-36 | KT260118.1 Phyllostachys edulis DREB1A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976433.1 | 2e-29 | ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A1E5VNF5 | 1e-31 | A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038 | ||||
STRING | Si010703m | 8e-29 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 2e-08 | ERF family protein |