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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462898734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 397aa MW: 43105.9 Da PI: 7.9129 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.7 | 2.2e-40 | 173 | 251 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ 462898734 173 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 251 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.6E-34 | 168 | 236 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.222 | 171 | 249 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.1E-37 | 172 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.9E-31 | 174 | 248 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MMNIPAAAGA NACDEFPYVS APPPSLFPIM EQQQQESSIQ RGEHHQLGYN LEANSLALLP 60 PSNHAAAHQT TITPIVSHSP HDILQFYPAA AASSHHHYLA GAGNYFGAGS TFQSYYPPAA 120 AAAAQPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH PPRCQAEGCK 180 ADLSGAKRYH RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA 240 DHNRRRRKSK PSDADAADKK RAQANKAAAA KDKAGSSSKN MDIGDGLTTQ VLGSALFSKE 300 QDQAMDLGEV VKEAVDPKGK SSMQQHAHHQ GIHQQNHHGF PFPTSSGSCF PQSQAVSSDN 360 TSNIAQVDPV DKLVRDGEEI KNGHTTLLSS KLDATDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-27 | 174 | 248 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 260 | RRRRKSKPSDADAADKKR |
2 | 244 | 249 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462898734 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960135.1 | 0.0 | protein LIGULELESS 1 | ||||
Swissprot | Q01KM7 | 1e-170 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0A9DKR3 | 0.0 | A0A0A9DKR3_ARUDO; Lg1 | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 9e-42 | squamosa promoter binding protein-like 8 |