PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

462898193

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 271aa MW: 30874.2 Da PI: 10.039

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462898193	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32	2e-10	187	209	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Crf+++t Ck+G CkF+H++ 462898193 187 ECRFYMKTRDCKFGVICKFHHPK 209 7********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	7.65E-5	183	211	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.4E-8	187	209	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.643	187	210	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
LVSHPQTTNN GRLEVLNTIP AQDGVKQLAW AGSVPVGLYV VQRENVFLDR LECRFYMKTR 60 DFQSNYPYTR ESPYALSRPS TCKTLVKKSD GGTKNKVVRA SIFTTPVQFL GQESVENTCT 120 RVCAHTHTGI LVLRRLVPHP QTTNNGRLDV PNTTLAHGGM KQLERASSVP VGFYAVQREN 180 VFLDRLECRF YMKTRDCKFG VICKFHHPKD RTVHIGSSSL DDQQRTTGGA QYYTSSCWSE 240 TTGKGNPRMF SSFKLALFQL DLIQYRRRMY F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462898193

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.3	1e-17	zinc finger nuclease 3