PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897688
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 315aa    MW: 33533.7 Da    PI: 5.0207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897688genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-06289310122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                ++C+ C+k+F++   L++H++ 
  462897688 289 HSCKSCSKTFNSAVALESHQKA 310
                79******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-7277313No hitNo description
PROSITE profilePS5015710.658289315IPR007087Zinc finger, C2H2
PfamPF128744.3E-4290313No hitNo description
PROSITE patternPS000280291313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
RFPNSTPPLN PNAHHAPTSL GFCAAAPPLP RAGAMEFWGE EVKPGVAVSC EAGDGFVIHL  60
SQAALGETKK GSENVVVYVK VGDKKLVIAT LSADKHPQMS CDLIFDDAFE LSHSSKTTTE  120
ELENDEIPLK NNENGKSAAK LPAKDGNKDK EDDDEESDDS DSDSDDLSSD SDSEDDSMSE  180
DDSSDDSEED EDEETPVKPV VGKKRAAETS LKTPASDKKA KLTTPKKETG DKKGVHVATP  240
HPAKQASKTP TDSKQKGPKT PADSKPKEKA PKTPADSKAK EKSPKSGSHS CKSCSKTFNS  300
AVALESHQKA KKHDA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682081.12e-80histone deacetylase HDT2 isoform X1
TrEMBLA0A0A9EU221e-91A0A0A9EU22_ARUDO; Hda106
STRINGSi004270m4e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-23histone deacetylase 3