PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897631
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 591aa    MW: 63700 Da    PI: 8.3889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897631genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-17217261147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
        462897631 217 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 261
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-15211265IPR009057Homeodomain-like
PROSITE profilePS5129422.056212266IPR017930Myb domain
TIGRFAMsTIGR015571.1E-15215264IPR006447Myb domain, plants
SMARTSM007171.6E-14216264IPR001005SANT/Myb domain
PfamPF002491.7E-14217260IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10217257IPR009057Homeodomain-like
CDDcd001672.11E-11219262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
VGSTYDVARL PSLPFAPKIC RLSSLLPLAI SFSFLASASS APSTPRLPPS SRLARPHVRP  60
RASVLLNRAP IAEGPRPQLL AGAIFSVFSS LLSFSGCLWW LSRREAVSSG FQAIPGKGGS  120
FPPIRLCVVS AGVGAGSFGR PLSARARRRF ELWAGLMAAM AQVEERDGLD SSDLAIDKRL  180
TLEVAKPPLM DDMMQPKAGM DGYPVKVRKP YTITKQREKW TEEEHEKFLE ALKLYGRSWR  240
QIQEHIGTKT AVQIRSHAQK FFSKVVREPG ASNTIEIPPP RPKRKPLHPY PRKCANSSTV  300
ANPATGQPKL APISSSSGSD QENGSPVSVL SAMQSDAFGS SVSNPSTGCT SPVSSSDDGT  360
NVPALMNGEE NMPPQQTEIH QSVKEVKEDN SDGDLSEEDS SSGVQETSLK LFGKTVIIPD  420
PRKVCPSNSG HEDGDTGSQS SCQEKLHTLS VGEVATYTAP NAWLLPYHSF PFHMGESGDA  480
RIAPLHLWWP YYGFPLSHPR ELGSAVLHGE GTGESESGKS PSVESSSDSM GNVQMTTPMV  540
KESLGAIQTA EAAQSFELKP SVNSAFVPVK PRHSGDEGTR GFVPYKRCKV E
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A2S3HG370.0A0A2S3HG37_9POAL; Uncharacterized protein
STRINGSi006457m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-38MYB_related family protein