PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462897485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 374aa MW: 40216.4 Da PI: 9.8816 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.5 | 5e-17 | 290 | 343 | 1 | 54 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++ 462897485 290 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQE 343 89*************************************************975 PP | |||||||
2 | bZIP_1 | 21.8 | 4.2e-07 | 335 | 365 | 25 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 k+e+++L+ekv++L++eN++L ++l+el++e 462897485 335 KEELKQLQEKVDSLTSENTSLHEKLKELEDE 365 799*************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.2E-29 | 1 | 101 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 2.8E-17 | 140 | 259 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.9E-14 | 285 | 348 | No hit | No description |
Pfam | PF00170 | 3.7E-16 | 290 | 345 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.3E-19 | 290 | 354 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.771 | 292 | 355 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.13E-9 | 293 | 349 | No hit | No description |
CDD | cd14702 | 5.99E-21 | 295 | 346 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 297 | 312 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF16559 | 3.0E-6 | 326 | 357 | IPR032352 | Arf GTPase-activating protein GIT1/2, coiled-coil domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGKGDVTTRS KSQKTSAVQN EQSTPTNPPT AYPDWSQFQA YYNAAGTAPM TPPAFFHSPV 60 APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQTSM PPGSHPYNPY PGLSPNGTVQ 120 TPKSGAGATE TDKSSKTKRK TPLKRSKGSL GSLDVVTAKN NKSPAKPSAS SSNEGSSQSE 180 SGSGSSSEGS STNSKSGSRV KGGSEHGQST QGSAVEPTQP SSGPVVLNPM MPFWPVHPPM 240 AGPATTVNMG GDYWGAPTSV PMHSKMIAAP TSAPSSNSRD VLSDPAIQDE RELKKQKRKQ 300 SNRESARRSR LRKQAEWEEV ANRADLLKQE NSSLKEELKQ LQEKVDSLTS ENTSLHEKLK 360 ELEDEKSNGN WYKY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 312 | RRSRLRK |
2 | 306 | 313 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462897485 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985057.1 | 0.0 | bZIP transcription factor 16 | ||||
Refseq | XP_022678888.1 | 0.0 | bZIP transcription factor 16 | ||||
Swissprot | Q501B2 | 1e-86 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | K4AMZ0 | 0.0 | K4AMZ0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ib00998.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11506 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 1e-58 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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