PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462895911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 206aa MW: 22388.3 Da PI: 7.412 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.2 | 2.1e-11 | 92 | 168 | 18 | 97 |
--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p kf++eh ++++s++ t+ ++ g+ W v+l + + +++ ++G +F ka++L eg +++F+++g++ f +v vf 462895911 92 MPDKFVQEHlTDSSPSSQKATIFSRVGKFWHVEL--DPDRPGVLQGDGRARFLKAHDLSEGNVLLFRYEGNMLF--RVEVF 168 69********555568899***************..*********************************99988..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0065 | 80 | 171 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 91 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.15 | 92 | 171 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-11 | 92 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.59E-9 | 92 | 168 | No hit | No description |
Pfam | PF02362 | 8.0E-9 | 92 | 167 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAAFSVRRRP RYAVVRLSPS CLDELVNASN TSLQTTRLYN ACTRCVRDPR ARAHLTICAA 60 RSGGVRGAAR LGGEEGGGTA QVLLVSPLGK EMPDKFVQEH LTDSSPSSQK ATIFSRVGKF 120 WHVELDPDRP GVLQGDGRAR FLKAHDLSEG NVLLFRYEGN MLFRVEVFLQ SGLLEECEAA 180 AAIRTDDIAG PSEPQEGESG PLFQSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462895911 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681867.1 | 2e-40 | LOW QUALITY PROTEIN: putative B3 domain-containing protein Os06g0632500 | ||||
Swissprot | Q67VL7 | 4e-32 | Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500 | ||||
STRING | Si008427m | 5e-40 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |