PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895046
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 322aa    MW: 34909.7 Da    PI: 4.9633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895046genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-19105154255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  462895046 105 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 154
                69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-32104163IPR001471AP2/ERF domain
PROSITE profilePS5103223.485105162IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-22105163IPR016177DNA-binding domain
SMARTSM003801.5E-35105168IPR001471AP2/ERF domain
CDDcd000185.68E-30105164No hitNo description
PfamPF008472.4E-11105154IPR001471AP2/ERF domain
PRINTSPR003672.7E-11106117IPR001471AP2/ERF domain
PRINTSPR003672.7E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MCGGAILAEL IPPPRRAAAR PVTAGHLWPA SSKKGGGGKN KRHGHEDVAE IDDFEAAFEE  60
FDDDFDEAEE EEDDDLGSRP FVFASKNAAH AGLAASQKKR GRGRHFRGIR QRPWGKWAAE  120
IRDPHKGTRV WLGTFNTAED AARAYDVEAR RLRGPKAKVN FPAAAGVRPR RRGAKARAAP  180
ETQPASRGAQ KKQDELVVKP ETAMASLDMD NFFDLTFPAA PPVMASSFTA SSVSESGSPA  240
KKPRMTDDSS EGSGGGDATL ELTDELDFDP FMLLQLPYMD GYESIDSLFA GDAVQDVNAV  300
NHDMNSAGLW SFDEFPIDGA LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22102162263ATERF1
3gcc_A2e-22102162263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344343e-80BT034434.1 Zea mays full-length cDNA clone ZM_BFc0170J03 mRNA, complete cds.
GenBankBT0393003e-80BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankBT0631743e-80BT063174.1 Zea mays full-length cDNA clone ZM_BFc0035E09 mRNA, complete cds.
GenBankEU9414383e-80EU941438.1 Zea mays clone 1452173 mRNA sequence.
GenBankEU9702443e-80EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269383e-80KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985469.11e-120ethylene-responsive transcription factor RAP2-3
RefseqXP_004985470.11e-120ethylene-responsive transcription factor RAP2-3
RefseqXP_004985471.11e-120ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0A9VK361e-133A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.29e-34ERF family protein