PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462895046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 34909.7 Da PI: 4.9633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.8e-19 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f tae+Aa+a++ +++l+g 462895046 105 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 154 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-32 | 104 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.485 | 105 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-22 | 105 | 163 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-35 | 105 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-30 | 105 | 164 | No hit | No description |
Pfam | PF00847 | 2.4E-11 | 105 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MCGGAILAEL IPPPRRAAAR PVTAGHLWPA SSKKGGGGKN KRHGHEDVAE IDDFEAAFEE 60 FDDDFDEAEE EEDDDLGSRP FVFASKNAAH AGLAASQKKR GRGRHFRGIR QRPWGKWAAE 120 IRDPHKGTRV WLGTFNTAED AARAYDVEAR RLRGPKAKVN FPAAAGVRPR RRGAKARAAP 180 ETQPASRGAQ KKQDELVVKP ETAMASLDMD NFFDLTFPAA PPVMASSFTA SSVSESGSPA 240 KKPRMTDDSS EGSGGGDATL ELTDELDFDP FMLLQLPYMD GYESIDSLFA GDAVQDVNAV 300 NHDMNSAGLW SFDEFPIDGA LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 102 | 162 | 2 | 63 | ATERF1 |
3gcc_A | 2e-22 | 102 | 162 | 2 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462895046 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034434 | 3e-80 | BT034434.1 Zea mays full-length cDNA clone ZM_BFc0170J03 mRNA, complete cds. | |||
GenBank | BT039300 | 3e-80 | BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds. | |||
GenBank | BT063174 | 3e-80 | BT063174.1 Zea mays full-length cDNA clone ZM_BFc0035E09 mRNA, complete cds. | |||
GenBank | EU941438 | 3e-80 | EU941438.1 Zea mays clone 1452173 mRNA sequence. | |||
GenBank | EU970244 | 3e-80 | EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds. | |||
GenBank | KJ726938 | 3e-80 | KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985469.1 | 1e-120 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_004985470.1 | 1e-120 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_004985471.1 | 1e-120 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0A9VK36 | 1e-133 | A0A0A9VK36_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ib00526.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 9e-34 | ERF family protein |