PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894879
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 303aa    MW: 34178.4 Da    PI: 8.1084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894879genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.11.2e-4731642128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                 pGfrFhPtdeelv++yL++kv+gk+l++ e+ik++diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+  +  
  462894879   3 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKDFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAatG-- 99 
                69***************************.89***************445555789**************************************8651.. PP

        NAM  99 l...................................vglkktLvfykgrapkgektdWvmheyrl 128
                                                    +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  462894879 100 RaaxxxxxxxxxxxxxxxxxxxxxispaapgraggcIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 164
                235677888888999999999999999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.1032191IPR003441NAC domain
SuperFamilySSF1019417.19E-37398IPR003441NAC domain
PfamPF023651.4E-244164IPR003441NAC domain
SuperFamilySSF1019412.88E-13133191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVLPGFRFHP TDEELVTFYL RRKVAGKRLS IEIIKDFDIY KHDPWDLPKA STISMDKEWY  60
FFCLRGRKYR NSIRPNRVTG SGFWKATGID RPIYSAATGR AAXXXXXXXX XXXXXXXXXX  120
XXXISPAAPG RAGGCIGLKK SLVFYRGSAG KGTKTEWMMH EFRLPPRPES PGSTPSSQEA  180
EVWTICRIFR RSITYKRQPQ VAGTPDSSCS ITGSLESDTG DEYMNGLPPQ APMNHNVSDV  240
YNSYQFQGQW NSDAVVPPPA MAGAFHHGPA VQDDLYYKDG CNWDDMVMEL TDPSVFYDCS  300
SYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-42419219166NO APICAL MERISTEM PROTEIN
1ut4_B2e-42419219166NO APICAL MERISTEM PROTEIN
1ut7_A2e-42419219166NO APICAL MERISTEM PROTEIN
1ut7_B2e-42419219166NO APICAL MERISTEM PROTEIN
4dul_A2e-42419219166NAC domain-containing protein 19
4dul_B2e-42419219166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894879
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932772e-75FP093277.1 Phyllostachys edulis cDNA clone: bphyem202p21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.11e-141transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK559e-74NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3L6T4I21e-140A0A3L6T4I2_PANMI; Transcription factor JUNGBRUNNEN 1-like
STRINGSi030477m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-76NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]