PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462894750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 35762.6 Da PI: 8.8834 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.6e-10 | 67 | 92 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + CkyGd+C+FaHg+ 462894750 67 KTRLCNKYNTAEGCKYGDKCNFAHGE 92 8***********************96 PP | |||||||
2 | zf-CCCH | 25.8 | 1.8e-08 | 214 | 238 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC++f G C +GdrC+ aHg 462894750 214 FKTKLCDNFTN-GACTFGDRCHSAHG 238 69*********.*************8 PP | |||||||
3 | zf-CCCH | 32.7 | 1.3e-10 | 304 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f G C +GdrC+FaHg+ 462894750 304 FKTKLCDNFTN-GSCTFGDRCHFAHGE 329 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.7 | 10 | 33 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.019 | 14 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 14 | 31 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.2 | 21 | 31 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 64 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 64 | 96 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-4 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-7 | 67 | 92 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.15E-9 | 125 | 205 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.5E-4 | 133 | 204 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 11.448 | 134 | 199 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.0E-10 | 135 | 203 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.51E-6 | 136 | 199 | No hit | No description |
Pfam | PF00013 | 2.5E-5 | 136 | 201 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-9 | 211 | 238 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 213 | 239 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 214 | 238 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-15 | 301 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-8 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.568 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-8 | 303 | 329 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MHQIFQVIIQ LKMNFTRTSG CPFGDGCHFL HCFLGGYQSV AKMTNLGGSA VAQPQGRMPM 60 GPTPSVKTRL CNKYNTAEGC KYGDKCNFAH GERELGKPMN GSLPGPVVPR PTGHYAPPPM 120 ASPGMATRAS FVSSATTKIS VDASPAGVII GGGVVNTKQI TRVTGAKLAI RDHESQDSSL 180 KNIELEGTFD QIKNASAMVR ELIVSIGGGP GSNFKTKLCD NFTNGACTFG DRCHSAHGCD 240 TKLAIRDHES DNILKNIELK GTFDQIKNAS AMVRELIVSS GGGAPPPARN PARGSNRGGP 300 GSNFKTKLCD NFTNGSCTFG DRCHFAHGEN ELCKPAAT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462894750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648412.2 | 1e-116 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-110 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A0E0JWR4 | 1e-118 | A0A0E0JWR4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G06300.1 | 1e-119 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-45 | C3H family protein |