PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894750
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 338aa    MW: 35762.6 Da    PI: 8.8834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894750genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-106792227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               kt+lC+ +     CkyGd+C+FaHg+
  462894750 67 KTRLCNKYNTAEGCKYGDKCNFAHGE 92
               8***********************96 PP
2zf-CCCH25.81.8e-08214238126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC++f   G C +GdrC+ aHg
  462894750 214 FKTKLCDNFTN-GACTFGDRCHSAHG 238
                69*********.*************8 PP
3zf-CCCH32.71.3e-10304329127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC++f   G C +GdrC+FaHg+
  462894750 304 FKTKLCDNFTN-GSCTFGDRCHFAHGE 329
                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.71033IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.0191434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-41431IPR000571Zinc finger, CCCH-type
PfamPF146081.22131No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-146497IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-86496IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-46592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3146593IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-76792IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.15E-9125205IPR004088K Homology domain, type 1
SMARTSM003224.5E-4133204IPR004087K Homology domain
PROSITE profilePS5008411.448134199IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.0E-10135203IPR004088K Homology domain, type 1
CDDcd001052.51E-6136199No hitNo description
PfamPF000132.5E-5136201IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.109.6E-9211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042213240IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4213239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5213240IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6214238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-15301332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-8303332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568303330IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-8303329IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8304329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MHQIFQVIIQ LKMNFTRTSG CPFGDGCHFL HCFLGGYQSV AKMTNLGGSA VAQPQGRMPM  60
GPTPSVKTRL CNKYNTAEGC KYGDKCNFAH GERELGKPMN GSLPGPVVPR PTGHYAPPPM  120
ASPGMATRAS FVSSATTKIS VDASPAGVII GGGVVNTKQI TRVTGAKLAI RDHESQDSSL  180
KNIELEGTFD QIKNASAMVR ELIVSIGGGP GSNFKTKLCD NFTNGACTFG DRCHSAHGCD  240
TKLAIRDHES DNILKNIELK GTFDQIKNAS AMVRELIVSS GGGAPPPARN PARGSNRGGP  300
GSNFKTKLCD NFTNGSCTFG DRCHFAHGEN ELCKPAAT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648412.21e-116PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-110C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0E0JWR41e-118A0A0E0JWR4_ORYPU; Uncharacterized protein
STRINGOPUNC02G06300.11e-119(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-45C3H family protein