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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462894750 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family |
C3H |
| Protein Properties |
Length: 338aa MW: 35762.6 Da PI: 8.8834 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462894750 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.7 | 2.6e-10 | 67 | 92 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + CkyGd+C+FaHg+
462894750 67 KTRLCNKYNTAEGCKYGDKCNFAHGE 92
8***********************96 PP
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| 2 | zf-CCCH | 25.8 | 1.8e-08 | 214 | 238 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC++f G C +GdrC+ aHg
462894750 214 FKTKLCDNFTN-GACTFGDRCHSAHG 238
69*********.*************8 PP
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| 3 | zf-CCCH | 32.7 | 1.3e-10 | 304 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f G C +GdrC+FaHg+
462894750 304 FKTKLCDNFTN-GSCTFGDRCHFAHGE 329
69*********.*************96 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 6.7 | 10 | 33 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 7.019 | 14 | 34 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 14 | 31 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.2 | 21 | 31 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 64 | 97 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-8 | 64 | 96 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.2E-4 | 65 | 92 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.314 | 65 | 93 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-7 | 67 | 92 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.15E-9 | 125 | 205 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 4.5E-4 | 133 | 204 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 11.448 | 134 | 199 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.0E-10 | 135 | 203 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 2.51E-6 | 136 | 199 | No hit | No description |
| Pfam | PF00013 | 2.5E-5 | 136 | 201 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 9.6E-9 | 211 | 238 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.042 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-4 | 213 | 239 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-5 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-6 | 214 | 238 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.6E-15 | 301 | 332 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.1E-8 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.568 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-8 | 303 | 329 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-8 | 304 | 329 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MHQIFQVIIQ LKMNFTRTSG CPFGDGCHFL HCFLGGYQSV AKMTNLGGSA VAQPQGRMPM 60
GPTPSVKTRL CNKYNTAEGC KYGDKCNFAH GERELGKPMN GSLPGPVVPR PTGHYAPPPM 120
ASPGMATRAS FVSSATTKIS VDASPAGVII GGGVVNTKQI TRVTGAKLAI RDHESQDSSL 180
KNIELEGTFD QIKNASAMVR ELIVSIGGGP GSNFKTKLCD NFTNGACTFG DRCHSAHGCD 240
TKLAIRDHES DNILKNIELK GTFDQIKNAS AMVRELIVSS GGGAPPPARN PARGSNRGGP 300
GSNFKTKLCD NFTNGSCTFG DRCHFAHGEN ELCKPAAT
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