PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894294
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 389aa    MW: 42801.1 Da    PI: 7.4375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894294genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05207226120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                + C+ C+k+F+r  n++ H+
  462894294 207 FICHVCSKTFNRYNNMQMHM 226
                89*****************9 PP
2zf-C2H212.20.00055293315123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C  Cgk+F  k + ++H +++
  462894294 293 FGCRRCGKPFAVKGDWRTHEKNC 315
                56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-5203230No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4207226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVLSAACAME SAAGVGVQFF EWLKPRSSSS PLASPSSFSS STSSSTLSTP SIDRSVIGDG  60
LVATSLCLPL LGRLEERSTS YDQGSNNPIK EEMNNNISTT TGTGAESGLD LNIGLPAIDD  120
YTSDSEEATM DEEDEEEDSE EEEKPARQHE VCKEEGGEQV RIQMMEGSDD CLRVCGEESM  180
IKGIFSSRGR RYWIPTPAQI LVGPVQFICH VCSKTFNRYN NMQMHMWGHG REYRKGPESL  240
KGTQAATLAL LKLPCYCCAP GCRNGVSHPR ARPLKDFRTL QTHYKRKHGA KHFGCRRCGK  300
PFAVKGDWRT HEKNCGKRWF CACGSDFKHK RSLNDHVRSF GGGHLPVVAP ADQQQQAPTA  360
AAVTAPQQPA KQRIIRFDQA VPAWSVTHA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592221e-179AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961925.11e-169protein TRANSPARENT TESTA 1
TrEMBLK3Z6X61e-168K3Z6X6_SETIT; Uncharacterized protein
STRINGSi022296m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.13e-93WIP domain protein 5