PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462893627 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 282aa MW: 29945.2 Da PI: 5.4216 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.9 | 6.8e-11 | 176 | 234 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ l++e+ 462893627 176 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSLLQRDTTGLTTEN 234 9**********************************************998887777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.3E-17 | 172 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 174 | 237 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-9 | 176 | 233 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-10 | 176 | 231 | No hit | No description |
SuperFamily | SSF57959 | 2.74E-11 | 176 | 228 | No hit | No description |
CDD | cd14703 | 3.45E-25 | 177 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MPGDGGCGDG LPPQSSRTAG APPKSATPPP EYDISRMPDF PTRNTGHRRA HSEILSLPDD 60 LDLSAPGGGD GPSLSDENDE ELFSMFLDVD KLNSACGASS EAEAESSSAA GDVGKGNGPG 120 QAPRPRHQHS QSMDESMSIK AEELVGAPGM EGMSSAEAKK AVSAAKLAEL ALVDPKRAKR 180 IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATTLSAQL SLLQRDTTGL TTENSELKIR 240 LQTMEQQVHL QDALNDTLRA EVQRLKVATG QVSNGGGAVA HH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462893627 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652949.1 | 1e-167 | transcription factor RF2a | ||||
Swissprot | Q69IL4 | 1e-141 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A1D6I8V3 | 1e-166 | A0A1D6I8V3_MAIZE; Putative transcription factor PosF21 | ||||
TrEMBL | A0A3L6DZU6 | 1e-166 | A0A3L6DZU6_MAIZE; Transcription factor RF2a | ||||
STRING | AC200057.4_FGP007 | 1e-162 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 9e-74 | bZIP family protein |
Publications ? help Back to Top | |||
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