PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462893379

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 99aa MW: 10890.2 Da PI: 7.4147

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893379	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.2	1e-10	78	99	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDg++WrKYG+K vk+s++pr 462893379 78 LDDGFKWRKYGKKAVKNSPNPR 99 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-11	66	99	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-9	70	99	IPR003657	WRKY domain
PROSITE profile	PS50811	13.574	73	99	IPR003657	WRKY domain
Pfam	PF03106	2.5E-6	79	99	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MADYAPSFPG GATVDAAFCA ELEDHRLFDF EYSPASIFAG AGGGDDHNEK KMKCGGDDKR 60 APMNGRIGFR TRSEVEILDD GFKWRKYGKK AVKNSPNPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893379

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440727.1	7e-35	probable WRKY transcription factor 50
TrEMBL	A0A139Z885	7e-38	A0A139Z885_BAMEM; Transcription factor WRKY1
STRING	Sb09g005700.1	3e-34	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-17	WRKY DNA-binding protein 50