PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462893346

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 362aa MW: 38923.1 Da PI: 8.1542

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893346	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.3e-06	92	124	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 af+ L+ +lP+ K +K +iL +A eYI+sL+ 462893346 92 GAFHALKAVLPPG-----SKKDKTSILIRAREYIRSLE 124 5899999999995.....5999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.017	74	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0029	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-5	85	124	No hit	No description
SuperFamily	SSF47459	3.93E-8	85	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-8	93	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDDEAVVYDG ALDMAAPHPV VVDGLLDHPH HGRSFPTSSS SSSISLRSAS LSCSPTSSAH 60 YANNAQLPAA KRGAFKSYAR HLGPRRQQQK PGAFHALKAV LPPGSKKDKT SILIRAREYI 120 RSLESKASEL EEKNNSLETR LAQRGSGGGD DDEKVQIEIT RAAKEEEPPV DPRDICTLKI 180 VVRSRCNMTD VVLRTLQCLK EQVGEDVNLV SMNTSSGAGA GPSRSCSSPR AVLTMQIKIE 240 ITRAAKEEEP PVDPRDICTL KIVVRSRCNM TDVVLRTLQC LKEQVGEDVN LVSMNTSSGA 300 GAGPSRSCSS PRAVLTMQIK SPGANWDEQP VKDAVAKVVA DALTLPKSPP SARLLQQEAD 360 AN

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDDEAVVYDG ALDMAAPHPV VVDGLLDHPH HGRSFPTSSS SSSISLRSAS LSCSPTSSAH  60
YANNAQLPAA KRGAFKSYAR HLGPRRQQQK PGAFHALKAV LPPGSKKDKT SILIRAREYI  120
RSLESKASEL EEKNNSLETR LAQRGSGGGD DDEKVQIEIT RAAKEEEPPV DPRDICTLKI  180
VVRSRCNMTD VVLRTLQCLK EQVGEDVNLV SMNTSSGAGA GPSRSCSSPR AVLTMQIKIE  240
ITRAAKEEEP PVDPRDICTL KIVVRSRCNM TDVVLRTLQC LKEQVGEDVN LVSMNTSSGA  300
GAGPSRSCSS PRAVLTMQIK SPGANWDEQP VKDAVAKVVA DALTLPKSPP SARLLQQEAD  360
AN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893346

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971740.1	3e-51	putative transcription factor bHLH041
TrEMBL	A0A1E5WNJ4	2e-56	A0A1E5WNJ4_9POAL; Uncharacterized protein
STRING	Si001328m	1e-50	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2900	31	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-07	bHLH family protein