PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 344aa MW: 37534.5 Da PI: 6.9114

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462893136	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.9e-32	203	260	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ 462893136 203 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 260 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-34	187	262	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-29	195	262	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	197	262	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	202	261	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	203	260	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MSSGGGGGGG GGDHHGDYHQ HGHSNLARAD GADHYVFNHN DMESFFFNQP AAASVRGGSR 60 TGADELMPPY SNLTDYLQGF LDPSGLARHL DAPLSAEDPV VKNELSVDVS HDSQGTSGVA 120 GEGAALLTPN SSVSLSSSDR EGEGQHSRSK KGRAKDEEEV ADEKDQEEGE NSMKVNKPKK 180 KAEKRQRQPR VAFLTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT PKCGVKKRVE 240 RSYQDPSTVI TTYEGQHTHH SPASLRAGSG HLFMSNAHLM PSGFRSDLMS MMHPLAMGMN 300 PNMYLPSMPP PAMPTSPAPP PQQGHFTDYA LLQDLFPSNM PNNP

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MSSGGGGGGG GGDHHGDYHQ HGHSNLARAD GADHYVFNHN DMESFFFNQP AAASVRGGSR  60
TGADELMPPY SNLTDYLQGF LDPSGLARHL DAPLSAEDPV VKNELSVDVS HDSQGTSGVA  120
GEGAALLTPN SSVSLSSSDR EGEGQHSRSK KGRAKDEEEV ADEKDQEEGE NSMKVNKPKK  180
KAEKRQRQPR VAFLTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT PKCGVKKRVE  240
RSYQDPSTVI TTYEGQHTHH SPASLRAGSG HLFMSNAHLM PSGFRSDLMS MMHPLAMGMN  300
PNMYLPSMPP PAMPTSPAPP PQQGHFTDYA LLQDLFPSNM PNNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-29	195	263	10	78	Probable WRKY transcription factor 4
2lex_A	1e-29	195	263	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462893136

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455987.1	1e-171	probable WRKY transcription factor 71
Swissprot	Q8VWJ2	1e-50	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	C5XED4	1e-170	C5XED4_SORBI; Uncharacterized protein
STRING	Sb03g028530.1	1e-171	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	2e-50	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]