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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
462893065 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
LBD |
| Protein Properties |
Length: 235aa MW: 23642.5 Da PI: 8.2879 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462893065 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 128 | 4.3e-40 | 40 | 124 | 1 | 85 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+k+l++l++++reda++sl+yeA++r+rdPvyG+vgvi+ l+
462893065 40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKILNELHPSQREDAVNSLAYEANMRLRDPVYGCVGVISLLRI 124
7*******************************************************************************98865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MATSSSSSLP ATPGSVVTMA SSPTASSISG GSIGGGAGSP CAACKFLRRK CQPDCVFAPY 60
FPPDNPQKFV HVHRVFGASN VTKILNELHP SQREDAVNSL AYEANMRLRD PVYGCVGVIS 120
LLRITIPGRS RSYVAAAEAA AVAAVGSNGG GQAPMAGFVG NPVVPNCSQN FVNVGHSTAA 180
AAIGGAGFMQ HDAYSFGYSS GLASEHGGLG SLGNGPFMKC AAGTAGGDDR STVAQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC134933 | 1e-102 | AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence. |
| GenBank | AC137617 | 1e-102 | AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence. |
| GenBank | AP014961 | 1e-102 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
