PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892794
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 309aa    MW: 34918.8 Da    PI: 6.9924
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892794genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.18.5e-28191244155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                ++r++W+ +LH++Fveav+q+ G+++A+Pk+ile+m+ +g+t+ehv+SHLQkYRl
  462892794 191 RQRIQWSADLHRKFVEAVHQI-GIDRAVPKKILEVMGADGITREHVASHLQKYRL 244
                58*******************.********************************8 PP
2Response_reg82.91e-27121221109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                   vl vdD+++ +++l++ l++ +y +v++++ +e+ale+l++++    +Dl++ D+ mp+mdG++ll+     e+++p+i+++a++e+e++ + +k G
     462892794  12 VLAVDDDRVCLKILETQLRHCKY-NVTAVTRAEAALEMLRARKdgeqFDLVISDVHMPDMDGFKLLELVGL-EMDIPVIMLSANEEMETMMKGIKHG 106
                   799********************.***************88888999*******************87754.558********************** PP

                   ESEEEESS--HHHHHH CS
  Response_reg  94 akdflsKpfdpeelvk 109
                   a d+l+Kp++ ++l +
     462892794 107 ACDYLVKPVHLDRLKN 122
                   ***********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.2E-1231284IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.9E-409159No hitNo description
SuperFamilySSF521726.4E-359130IPR011006CheY-like superfamily
SMARTSM004481.7E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.93911128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2412122IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.63E-2813121No hitNo description
SuperFamilySSF466897.08E-19188248IPR009057Homeodomain-like
PROSITE profilePS5129411.706188247IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-28189249IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24192244IPR006447Myb domain, plants
PfamPF002492.2E-7195243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDMESFLAGL RVLAVDDDRV CLKILETQLR HCKYNVTAVT RAEAALEMLR ARKDGEQFDL  60
VISDVHMPDM DGFKLLELVG LEMDIPVIML SANEEMETMM KGIKHGACDY LVKPVHLDRL  120
KNIWLHVVKK SMNDPRDHIS GANNDASQKR QSGDPEDDKN GADDTKKHSR KNKKDGDDPE  180
EDSENTSTQK RQRIQWSADL HRKFVEAVHQ IGIDRAVPKK ILEVMGADGI TREHVASHLQ  240
KYRLALKKVS LGTDKQPNPC PAGTESWRRN WNYINMNGLA SSPSALGMHH CCTLSQFSPL  300
APREAWAFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20187250164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0620952e-34AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds.
GenBankHQ8587452e-34HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds.
GenBankHQ8587602e-34HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681872.11e-121two-component response regulator ORR25
SwissprotA2X1N29e-99ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLK3Y0Y21e-120K3Y0Y2_SETIT; Uncharacterized protein
STRINGSi007844m1e-121(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-79response regulator 12