PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462892725

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 843aa MW: 93924 Da PI: 5.9901

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462892725	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	512	562	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ 462892725 512 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 562 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.393	501	582	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-26	514	562	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.45E-22	728	820	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.5E-24	732	816	No hit	No description
PROSITE profile	PS51745	21.199	734	817	IPR000270	PB1 domain
SMART	SM00666	9.0E-23	734	817	IPR000270	PB1 domain
CDD	cd06407	2.42E-39	735	816	No hit	No description
Pfam	PF00564	3.5E-16	736	816	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MERAPQNEDD GLLGCGAMEE VVVGDMDLSY NFEVDATVKE RLRRALERIA SLSQSQPGEL 60 LAQVWVPTVI GDRQVLTTPF WLDRRNERLA SYRTVSMNSP PTRARAPSWG CRAASSSALS 120 TEEDPRVRHA QHFDIRGSVA LPIFEPRSRA CLGVVELVMT TQKVNYNAEI ENICCALEEV 180 DLRTTDVSSD PLGKVVDTSY RTILPEIVDV LRTVCDRHAL PLAQAWIPCI CQAKRGSRHS 240 DEKIKYCVST VDEACYVRDP AVRGFHQACS EHHLFRGEGV VGRAFGTNEP CFSPDITAYS 300 KVHYPLSHHA KLFNLKAAVA IRLRSVRTGS LDFVLEFFLP VDCLESEDQR AMLNSLSITI 360 QRTCYTLRVV SLKELVNEGS IETSLVTPPE FYAKSMHENL DELCSGVDVP ARTTSLETSE 420 EVSSWIASLV DAQNKGVKEM DGDLPFGFSK QEDEGFSVTT GWNTSPVLGP EGSIFSGFKH 480 HEDYEVKEAT CSSRPSSLNS EKTAEKRRTK TEKTVSLEEL RKHFAGSLKE AAKNLGVCPT 540 TLKRICRQHG INRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVQLSSLYE NFTKTSWSEK 600 ELQGDATYPL SEQNGHLEPS VPDRQCEGRF TSHTSGSNSL SPSGSQSSNS SHGYSSGSKT 660 QQQVVSAPEL SIKQEVFMEE NQSSTVLKGA SHTEVHMLTE EIPVTLSRSQ SQMLLSEQKQ 720 MENISGMQKP KPDALKIKAM YGEERCVFRL QPSWGFDKLK EEIVRRFSIS KENYVDLKYL 780 DDESEWVLLT CDADLLECID VYKSSSAQTV KILVNPNVQP VLNPSFGQTE LYLSEAPGPM 840 ARQ

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MERAPQNEDD GLLGCGAMEE VVVGDMDLSY NFEVDATVKE RLRRALERIA SLSQSQPGEL  60
LAQVWVPTVI GDRQVLTTPF WLDRRNERLA SYRTVSMNSP PTRARAPSWG CRAASSSALS  120
TEEDPRVRHA QHFDIRGSVA LPIFEPRSRA CLGVVELVMT TQKVNYNAEI ENICCALEEV  180
DLRTTDVSSD PLGKVVDTSY RTILPEIVDV LRTVCDRHAL PLAQAWIPCI CQAKRGSRHS  240
DEKIKYCVST VDEACYVRDP AVRGFHQACS EHHLFRGEGV VGRAFGTNEP CFSPDITAYS  300
KVHYPLSHHA KLFNLKAAVA IRLRSVRTGS LDFVLEFFLP VDCLESEDQR AMLNSLSITI  360
QRTCYTLRVV SLKELVNEGS IETSLVTPPE FYAKSMHENL DELCSGVDVP ARTTSLETSE  420
EVSSWIASLV DAQNKGVKEM DGDLPFGFSK QEDEGFSVTT GWNTSPVLGP EGSIFSGFKH  480
HEDYEVKEAT CSSRPSSLNS EKTAEKRRTK TEKTVSLEEL RKHFAGSLKE AAKNLGVCPT  540
TLKRICRQHG INRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVQLSSLYE NFTKTSWSEK  600
ELQGDATYPL SEQNGHLEPS VPDRQCEGRF TSHTSGSNSL SPSGSQSSNS SHGYSSGSKT  660
QQQVVSAPEL SIKQEVFMEE NQSSTVLKGA SHTEVHMLTE EIPVTLSRSQ SQMLLSEQKQ  720
MENISGMQKP KPDALKIKAM YGEERCVFRL QPSWGFDKLK EEIVRRFSIS KENYVDLKYL  780
DDESEWVLLT CDADLLECID VYKSSSAQTV KILVNPNVQP VLNPSFGQTE LYLSEAPGPM  840
ARQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462892725

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698190.1	0.0	protein NLP1 isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6TQF2	0.0	A0A3L6TQF2_PANMI; Protein NLP1-like isoform X2
STRING	Si034133m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-166	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]