PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892468
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 370aa    MW: 40667.1 Da    PI: 8.3351
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892468genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.65.1e-211691787
   trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               m+ ++r+++lk+plWe+vs+k+++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  462892468  1 MDAAFREAALKGPLWEDVSRKLAAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 69
               6889*************************************************97..66667******985 PP
2trihelix932.9e-2989166987
   trihelix   9 aLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                ++i++r+e+e r++++  k+plWe++s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  462892468  89 CMIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 166
                68************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.00E-17149No hitNo description
PfamPF138372.9E-15470No hitNo description
PfamPF138373.0E-1989167No hitNo description
CDDcd122033.46E-2591145No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDAAFREAAL KGPLWEDVSR KLAAMGYKRS AKKCREKFEN VDKYYKRTKD GRAGRGDGKA  60
YRFFSELEAL HGGLPWPWRR HRSSLSPPCM IQLRTELEAR YQDSGPKGPL WEDISAGMRR  120
LGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY YHQLEALYRS KALASASSSS  180
PHPPPPRPAD TVLAAVPLSQ TPPQDVHKMN NGNGCANGGS SGGTQQGTNG GVAATCSFPV  240
DVAGGNGTPA KKQQEDIIMK ETPTMAEETP QPVSMNDSYS PQPVSMNDSY VNDRMDAGDS  300
DSMDDDDEDD FDDDVVGGGN SNKMQYEIQF QRQQQQSQSS VVRPNATAGA GSAGPGPATT  360
TGSFLTMVHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892468
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578233e-93AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.11e-86trihelix transcription factor GTL1 isoform X1
SwissprotQ391175e-40TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A368SX122e-86A0A368SX12_SETIT; Uncharacterized protein
STRINGSi034382m5e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-44Trihelix family protein