PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892124
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 340aa    MW: 38011.1 Da    PI: 6.6796
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892124genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.32.6e-26189242155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                ++r++W+ +LH++Fveav+q+ G+++ +Pk+ile+m+ +g+t+ehv+SHLQkYRl
  462892124 189 RQRIQWSADLHRNFVEAVHQI-GIDRVVPKKILEVMGADGITREHVASHLQKYRL 242
                58*******************.********************************8 PP
2Response_reg81.52.6e-27101201109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                   vl vdD+++ +++l++ l++ +y +v++++++e+ale+l++++    +Dl++ D+ mp+mdG++ll+     e+++p+i+++a++e+e++ + +k G
     462892124  10 VLAVDDDRVCLKILETQLRHCKY-NVTAVTHAEAALEMLRARKdgdqFDLVISDVHMPDMDGFKLLELVGL-EMDIPVIMLSANEEMETMMKGIKHG 104
                   799********************.***************98888999*******************87754.558********************** PP

                   ESEEEESS--HHHHHH CS
  Response_reg  94 akdflsKpfdpeelvk 109
                   a d+l+Kp+  ++l +
     462892124 105 ACDYLVKPVYLDRLKN 120
                   *********9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-347128IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-407164No hitNo description
SMARTSM004481.4E-298122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.5589126IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-2410120IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.63E-2611119No hitNo description
SuperFamilySSF466895.55E-18186246IPR009057Homeodomain-like
PROSITE profilePS5129410.267186245IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-27187247IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-24190242IPR006447Myb domain, plants
PfamPF002498.3E-7193241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MESFLAGLRV LAVDDDRVCL KILETQLRHC KYNVTAVTHA EAALEMLRAR KDGDQFDLVI  60
SDVHMPDMDG FKLLELVGLE MDIPVIMLSA NEEMETMMKG IKHGACDYLV KPVYLDRLKN  120
IWLHVVKKSM NDPRDHISGG NDDASQKRQS GDAEDENNGA DDTKKHSRKN KKDGDDPEED  180
SENTSTQKRQ RIQWSADLHR NFVEAVHQIG IDRVVPKKIL EVMGADGITR EHVASHLQKY  240
RLALKKLSLG TDKQSNPCPA GTESWRTDWN YINMNGLASS PSALGMHRLL HSRSVQPISS  300
QRSLGIPVRD MGPAGNGGNL LNAAVHDVRD GHVAVDKDWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18185248164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0620953e-34AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds.
GenBankHQ8587453e-34HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds.
GenBankHQ8587603e-34HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681872.11e-131two-component response regulator ORR25
SwissprotQ6H8051e-104ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3Y0Y21e-134K3Y0Y2_SETIT; Uncharacterized protein
STRINGSi007844m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-83response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]