PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892088
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 270aa    MW: 29422 Da    PI: 6.9814
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892088genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.34.4e-353483655
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55
                +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg 
  462892088 34 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGG 83
               58*********************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-331682IPR003851Zinc finger, Dof-type
PfamPF027013.5E-303482IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.7393488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLSSHHEAMM PYAPPRPPSL LVDRRYKQGG EVAPNCPRCD SPNTKFCYYN NYSLSQPRYF  60
CKGCRRYWTK GGSLRNVPVG GGGXXXXXXX XXREAAAFGN RFPGPVRPDM VLEGMVGNPA  120
NPGQAMPDVP SSGDGSSIDL AMLYAKFLNH PPGDAGVGVQ RVQRPEPRRR SGAGAVNRSL  180
PRRVRVQAAL GELNFAMDQS CFDSLGLPAD VGNLSSWCSM VPSLSTLEDP KYDSLDSFPD  240
DALSLHDGMI SAPDHDWSVD CQGLEALYMP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824081e-106KC582408.1 Sorghum bicolor dof11 protein (dof11) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458818.11e-129dof zinc finger protein DOF5.1
TrEMBLA0A3L6RFR81e-138A0A3L6RFR8_PANMI; Uncharacterized protein
STRINGOPUNC01G37170.11e-136(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.15e-35Dof family protein