PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 304aa MW: 34132.5 Da PI: 7.8768

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462891720	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.3	2.2e-12	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ 462891720 162 YQPDICKDYKETGYCGYGDSCKFMHD 187 67789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.57E-9	159	192	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	161	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	161	189	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-10	162	187	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-12	162	192	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	8.6E-14	236	281	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF13920	9.6E-9	239	280	No hit	No description
SuperFamily	SSF57850	1.52E-13	239	282	No hit	No description
PROSITE profile	PS50089	10.689	240	278	IPR001841	Zinc finger, RING-type
CDD	cd00162	3.12E-8	240	281	No hit	No description
SMART	SM00184	7.5E-5	240	277	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	255	264	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MADSGSGGAS APVCNFVRKP PKNIRKRPAA PAGSADEXXX XXXXXXXXXX XEPRKFQYES 60 SRTIQASTDS RATATLETET EFDRDARAIR ERQLKQAEES LKKNPSAAAA SGSGEVYKGI 120 HGYTDYKAGF RREHTVSSEK AGGSHGPLRA SAHIRLTARF DYQPDICKDY KETGYCGYGD 180 SCKFMHDRGD YKSGWQLEKE WEEAEKARKR RIAMRGGDGS DDEAAEDDSD DDEEALPFAC 240 FICREPFVDP VVTKCKHYFC EHCALKHHSK NKKCFVCNKP TLGIFNAAQE IRKKMAEDKK 300 KQQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	2e-63	58	295	100	317	RING finger protein 113A
5z58_M	2e-63	58	295	100	317	RING finger protein 113A
6ff4_t	2e-63	58	295	100	317	RING finger protein 113A
6ff7_t	2e-63	58	295	100	317	RING finger protein 113A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462891720

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831567	0.0	CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	1e-175	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-162	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A3B6JMH3	1e-174	A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBL	A0A453IHI9	1e-174	A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBL	R7W9H9	1e-173	R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRING	EMT14529	1e-174	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-121	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]