PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462891287

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 852aa MW: 94482.5 Da PI: 5.1344

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462891287	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	522	572	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ 462891287 522 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 572 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.393	511	592	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	524	572	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.41E-22	737	829	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.7E-24	740	825	No hit	No description
SMART	SM00666	1.6E-22	743	826	IPR000270	PB1 domain
PROSITE profile	PS51745	20.844	743	826	IPR000270	PB1 domain
CDD	cd06407	5.36E-39	744	825	No hit	No description
Pfam	PF00564	7.5E-16	745	825	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MERAPQNEDD GLLGCGAMEE VVVGDMDLMD ELFLAAPGFD FSDFSHPGAA GASPAAFSPL 60 FDICSTTTTA TPPPQAGEDE PEKARLASYR TVSMKYQFSA DESSRAELGL PGRVFVGRVP 120 EWTPDVRYFS TEEYPRVRHA QYFDIRGSVA LPIFEPRSRA CLGVVELVMT TQKINYNAEI 180 ENICSALEEV DLRTTDVSSD PLGKAVDTSY RAILPEIVDV LRTVCERHAL PLAQAWIPCI 240 CQAKRGSRHS DEKIKYCVST VDEACYVRDP AVRGFHQACS EHHLFRGEGV VGRAFGTNEP 300 CFSPDITAYS KVQYPLSHHA KLFNLKAAVA IRLRSVRTGS LDFVLEFFLP VDCVESEDQR 360 AMLNSLSVTI QQTCYTLRVV SLKELVNEGS IETSLVTPPE FYAKSMHENL DEICSGVDVP 420 ARTTSLETSE EVSSWIASLV DAQNKGVKEM DGDLPFVFSK QEDEGFSVTT GWNTSPVLGP 480 EGSIFSGFKH HEDYDVKEAT CSSRPSSLNS EKTAEKRRTK TEKTVSLEEL RKHFAGSLKE 540 AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVQLSSLYE 600 NFTKTSWSEK ELQGDATYPL SEQKAHLEPS VPDQQCEGRF TSHTSGSNSL SPSGSQSSNS 660 SHGCSIGSKT QQQVSAPELA IKQEVFMEEN QSSTVLKAAS HAELHMLTEE RPVTLSRSQS 720 QMLLSEQKQI EDISGMQKSK PDALKIKAMY GEERCVFRLQ PSWGFDKLKE EIVRRFSIAK 780 ENYVDLKYLD DESEWVLLTC DADLLECIDV YKSSSAQTVK ILVNPNVQPV LNPSFGQTEL 840 YLSEVPGPMA RQ

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MERAPQNEDD GLLGCGAMEE VVVGDMDLMD ELFLAAPGFD FSDFSHPGAA GASPAAFSPL  60
FDICSTTTTA TPPPQAGEDE PEKARLASYR TVSMKYQFSA DESSRAELGL PGRVFVGRVP  120
EWTPDVRYFS TEEYPRVRHA QYFDIRGSVA LPIFEPRSRA CLGVVELVMT TQKINYNAEI  180
ENICSALEEV DLRTTDVSSD PLGKAVDTSY RAILPEIVDV LRTVCERHAL PLAQAWIPCI  240
CQAKRGSRHS DEKIKYCVST VDEACYVRDP AVRGFHQACS EHHLFRGEGV VGRAFGTNEP  300
CFSPDITAYS KVQYPLSHHA KLFNLKAAVA IRLRSVRTGS LDFVLEFFLP VDCVESEDQR  360
AMLNSLSVTI QQTCYTLRVV SLKELVNEGS IETSLVTPPE FYAKSMHENL DEICSGVDVP  420
ARTTSLETSE EVSSWIASLV DAQNKGVKEM DGDLPFVFSK QEDEGFSVTT GWNTSPVLGP  480
EGSIFSGFKH HEDYDVKEAT CSSRPSSLNS EKTAEKRRTK TEKTVSLEEL RKHFAGSLKE  540
AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ MVIDSVHGAE GTVQLSSLYE  600
NFTKTSWSEK ELQGDATYPL SEQKAHLEPS VPDQQCEGRF TSHTSGSNSL SPSGSQSSNS  660
SHGCSIGSKT QQQVSAPELA IKQEVFMEEN QSSTVLKAAS HAELHMLTEE RPVTLSRSQS  720
QMLLSEQKQI EDISGMQKSK PDALKIKAMY GEERCVFRLQ PSWGFDKLKE EIVRRFSIAK  780
ENYVDLKYLD DESEWVLLTC DADLLECIDV YKSSSAQTVK ILVNPNVQPV LNPSFGQTEL  840
YLSEVPGPMA RQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462891287

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698190.1	0.0	protein NLP1 isoform X2
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6TQF2	0.0	A0A3L6TQF2_PANMI; Protein NLP1-like isoform X2
STRING	Si034133m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]