PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462891179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 904aa MW: 99822.5 Da PI: 9.6017 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.7e-07 | 269 | 290 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +f + G C++G++C+FaH+ 462891179 269 EQCYNFVK-GRCNRGASCRFAHD 290 56******.*************7 PP | |||||||
2 | zf-CCCH | 20.5 | 8.4e-07 | 329 | 348 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa +G+C++G++C++ H 462891179 329 PCKFFA-SGQCRRGANCPYLH 348 8**555.5************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.413 | 181 | 208 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0059 | 181 | 207 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 186 | 206 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.15 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-5 | 269 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 270 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 324 | 350 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 325 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 327 | 350 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-5 | 328 | 348 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MTGESRRHRS KWDTTEGAPD VVEISEDESP ERKDIHTDGV NKDIKEIQSK ASSERSQPPK 60 LADEHDNKGW GKAGLEKPHG NQGINRYADD RRRGDGWGIA LNRGYSSRMP SDPDPWRPRS 120 RSPSPRGVWN RPRRNRSRSR SRSRNRSRSR SRSRGRGRGR SRSPYFADRG PEWRIERGRT 180 SGGPLPCRDF VAGRCRRGVN CRFPHEDGGH RPFEEHHPAG PRERYGYPSK EFTDSREQND 240 FLQSRQPRGR YDDETWERSE PRRDYRSAEQ CYNFVKGRCN RGASCRFAHD DSAPQGGWRD 300 ETRQSAYDRV GPDSSYGNRT EHRRVNKNPC KFFASGQCRR GANCPYLHEE APQSQMGLSA 360 PDEPSDYSNV RTGRGNFSNW GDQNNAVHAT SQIMSRDDRE NPVSQNIGRN GSSYEYENRH 420 PKDAGKSQYQ IITQDDFGSQ VHKKENATSQ QSQLFTSVQT NVDSMNNDKV SGMDGQSAPG 480 TAGNLSMHTG MHASNVTENL APILQRQDAI PEPPTLPVTT HLQNNTSSLS SNSHMQQSNF 540 SVHPQEQFLV TQAAANNSTH NVQGQAVAPH MGHSHVGYGL GAQALPNLSA HNGHNFSIPG 600 QVPQDLPTSV HTGQNQAAIE RLGQDSGAQA QSIQNMQNFQ PVAPNVQTQS LQGLPIVPTS 660 SSADIIGGSV SHNAAKSEDI QRVTASLAQY FGNAGLSAGT VGLPSSDPNM NSSLMVTSSA 720 APPAVQPNAW PWPQQQAGMV QSAPAIPSEQ HQQAPQTFQV PIAVGSNNGY SMPLPHAGAS 780 TGQAAASVNE TMPKEKKKGE TKDTDAEVDE DGDNKKGKDS KALKMFKIAL ADFVKEALKP 840 TWKEGQMSRE IHKTIVKKVV DKVTSTVENT PPTKEKIDIY MSFSKEKLNK LVQAYVGKYA 900 TKTT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 155 | RSRSRSRGR |
2 | 151 | 161 | RSRGRGRGRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462891179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820462.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_025820463.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A2T7D363 | 0.0 | A0A2T7D363_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa02279.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-10 | C3H family protein |
Publications ? help Back to Top | |||
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