PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462891102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 144aa MW: 16957.7 Da PI: 10.3816 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.7 | 2.2e-06 | 17 | 39 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H 462891102 17 FVCEVCNKGFQREQNLQLHRRGH 39 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.6e-05 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ 462891102 93 WKCDKCNKRYAVQSDWKAHSKTC 115 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.44E-8 | 16 | 39 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-6 | 16 | 39 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0041 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.0E-6 | 17 | 39 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 300 | 58 | 88 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-6 | 81 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.44E-8 | 88 | 113 | No hit | No description |
SMART | SM00355 | 110 | 93 | 113 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSVIALSPRT LLATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP KENRRKVYLC 60 PEPTCVHHDP SRALGDLTGI KKHYCRKHGE KKWKCDKCNK RYAVQSDWKA HSKTCGTREY 120 RCDCGTLFSR SVPFFLRRFD SGFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-23 | 89 | 138 | 3 | 52 | Zinc finger protein JACKDAW |
5b3h_F | 5e-23 | 89 | 138 | 3 | 52 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462891102 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754865 | 1e-162 | AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241804.2 | 8e-96 | uncharacterized protein LOC542697 | ||||
Refseq | XP_008648994.1 | 9e-96 | uncharacterized protein LOC542697 isoform X5 | ||||
Refseq | XP_008649003.1 | 9e-96 | uncharacterized protein LOC542697 isoform X5 | ||||
Refseq | XP_008649023.1 | 8e-96 | uncharacterized protein LOC542697 isoform X7 | ||||
Refseq | XP_015695695.1 | 6e-96 | PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial | ||||
Refseq | XP_020396172.1 | 9e-96 | uncharacterized protein LOC542697 isoform X5 | ||||
Swissprot | Q9ZUL3 | 2e-87 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A1D6KMX0 | 2e-94 | A0A1D6KMX0_MAIZE; Indeterminate domain p1 | ||||
TrEMBL | B7ZXB4 | 2e-94 | B7ZXB4_MAIZE; Indeterminate domain p1 | ||||
STRING | Pavir.Fb02381.1.p | 1e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 8e-90 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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