PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 86aa MW: 9351.56 Da PI: 9.0166

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462889973	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.3	7.1e-35	12	84	1	73
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvh++FGasnv+kll++lp+ +reda++sl+yeA+ar+rdP 462889973 12 PCAACKLLRRKCTQGCVFAPYFPPDNPSKFANVHRVFGASNVSKLLHELPHAQREDAVNSLAYEADARLRDPA 84 7***********************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.961	11	86	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-34	12	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MSSSSSSSSS SPCAACKLLR RKCTQGCVFA PYFPPDNPSK FANVHRVFGA SNVSKLLHEL 60 PHAQREDAVN SLAYEADARL RDPALR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-39	2	83	1	82	LOB family transfactor Ramosa2.1
5ly0_B	3e-39	2	83	1	82	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462889973

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136972	2e-66	AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence.
GenBank	AP014959	2e-66	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-66	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466819.1	1e-44	LOB domain-containing protein 36
Refseq	XP_020161127.1	9e-45	LOB domain-containing protein 6-like
Refseq	XP_020161128.1	9e-45	LOB domain-containing protein 6-like
Swissprot	Q8L8Q3	2e-40	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A287N9X4	2e-44	A0A287N9X4_HORVV; Uncharacterized protein
STRING	TRIUR3_06488-P1	9e-45	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-41	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]