PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

TALE

Protein Properties

Length: 221aa MW: 24706.1 Da PI: 7.5433

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462889327	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	156	188	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ 462889327 156 PYPTEEDKVRLASMTGLDPKQINNWFINQRKRH 188 8*****************************885 PP
2	ELK	33.7	7.9e-12	108	129	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ 462889327 108 ELKEMLLKKYSGCLSRLRSEFL 129 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.5E-6	37	77	IPR005540	KNOX1
Pfam	PF03790	7.3E-11	39	61	IPR005540	KNOX1
PROSITE profile	PS51213	10.423	108	128	IPR005539	ELK domain
Pfam	PF03789	9.2E-9	108	129	IPR005539	ELK domain
SMART	SM01188	3.6E-6	108	129	IPR005539	ELK domain
PROSITE profile	PS50071	12.455	128	191	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-20	130	199	IPR009057	Homeodomain-like
SMART	SM00389	4.2E-14	130	195	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-27	133	193	IPR009057	Homeodomain-like
CDD	cd00086	2.11E-13	140	192	No hit	No description
Pfam	PF05920	5.2E-17	148	187	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	166	189	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEDLYSIHPG ISRVGGAASE ASIVGVGSGP SSADLTELMK AQIASHPRYP SLLSAYIECR 60 KGQIVSMQMG CTAVRDEMMV SSEDEQCSGD TDVADMGQEH SSRLADHELK EMLLKKYSGC 120 LSRLRSEFLK KRKKGKLPKD ARLVLLDWWN THYRWPYPTE EDKVRLASMT GLDPKQINNW 180 FINQRKRHWK PSEDMRFALM EGVAGGSSGT TLYFDTGTIG P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	132	LRSEFLKKRK
2	129	133	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:10488233}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462889327

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966118	1e-143	EU966118.1 Zea mays clone 291871 homeobox protein OSH1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967561.1	1e-100	homeobox protein knotted-1-like 1
Swissprot	A2Y007	4e-87	KNOSA_ORYSI; Homeobox protein knotted-1-like 10
Swissprot	Q7GDL5	4e-87	KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBL	B9FM99	1e-101	B9FM99_ORYSJ; Uncharacterized protein
STRING	GRMZM2G087741_P01	3e-97	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.2	3e-42	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012] Xu Y, et al. OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice. Plant J., 2015. 83(5): p. 806-17 [PMID:26121094] Kir G, et al. RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture. Plant Physiol., 2015. 169(1): p. 826-39 [PMID:26162429]