PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462888920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 678aa MW: 78597 Da PI: 8.5296 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 654 | 677 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++++G+C+y ++C ++H+ 462888920 654 RKPCNFYYKNGWCRYEENCWYSHD 677 79*******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF68906 | 4.21E-6 | 156 | 196 | No hit | No description |
Gene3D | G3DSA:1.10.720.30 | 1.9E-7 | 157 | 196 | IPR003034 | SAP domain |
Pfam | PF02037 | 5.6E-7 | 161 | 195 | IPR003034 | SAP domain |
PROSITE profile | PS50800 | 8.728 | 161 | 195 | IPR003034 | SAP domain |
PROSITE profile | PS50103 | 13.742 | 651 | 678 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 652 | 677 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0091 | 652 | 678 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-4 | 653 | 677 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 654 | 677 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MAAASAAGDP RARRLPQSPE ERREEDESEE EEEVESGEED EGDGDGSEVA SLADLCDPDT 60 GSDDDPTFDP DADGDLEVEA VLRSRMSRMS ISASARKGRY GGGGPSLFFP FSDWGAKLIR 120 KGSAVPKMEK EDIDLLAMVD KLIKVVDMDI VAMYLCADGQ LEKLKVYECK SYLRMHKLRL 180 TGKKEVLLNR IREHIEVKNA REVKYPVSSF VLNCKGDACK DDVVMFEQNI YRRKKGAPRE 240 VKRLCGQRTN TGRIIKESYG TAKQQHTFTI EILWSKGYKP WPPLHPLLIK GRNLYKDKTM 300 RQPWTDEEER NRVLQEKHAR GFVARKSRAS RIQEKEIERK MKFNSLPLSI RTDEMKCPSL 360 QNGERGNTMQ QHIPLKVTPT QHNEVLPQKV GARTFKQECN EGPSIQPGGL QKQMHPQATH 420 TQQTFKDSHQ QSKYQNEAEV LQQEGTMGTY RKECTDGQAP SQQNRGSGNA RHHQISSKLS 480 TSHQTSKYPQ QPPNHQYHND VRSYRGEVDY QNNRYRAAEY SEPVYQPRGN SIQHANAHQH 540 GSNCHQNAPA DHSVHQPLRS RNQNFSSRDQ YYGQGYYHQY NSGYRRMTRE QYHPQGPQQN 600 QHQNEYNHGH TTQYQYHTQQ NQHQNYGDHR RTNHKQHYHE QNQPQQHPIQ PSQRKPCNFY 660 YKNGWCRYEE NCWYSHDF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462888920 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986580.2 | 0.0 | zinc finger CCCH domain-containing protein 62 | ||||
Swissprot | Q338N2 | 1e-179 | C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62 | ||||
TrEMBL | A0A368SKH2 | 0.0 | A0A368SKH2_SETIT; Uncharacterized protein | ||||
STRING | Si040267m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13107 | 20 | 22 |
Publications ? help Back to Top | |||
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