PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462888400

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 519aa MW: 55038.4 Da PI: 10.3772

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462888400	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2e-13	40	100	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ +r+ r+++NRe+A+ sRqRKk+++eeLeekvk++ + +L ++++ e a+l+++ 462888400 40 EDPRRAARLMRNRESAQLSRQRKKKYVEELEEKVKSMHSVINDLNSRISFVVAENATLRQQ 100 66789*********************************999999999888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-15	39	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.002	41	101	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-12	42	101	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-15	43	101	No hit	No description
SuperFamily	SSF57959	3.88E-12	43	101	No hit	No description
CDD	cd14704	2.47E-20	44	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042538	Biological Process	hyperosmotic salinity response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
GAKCRRSGDG ELSPSASASA SASRAAAEGS EERDAVGEEE DPRRAARLMR NRESAQLSRQ 60 RKKKYVEELE EKVKSMHSVI NDLNSRISFV VAENATLRQQ LGNGSGNCPP PGVVYPPAPL 120 PGMPFPWVPG YAMRPHSSQV PLVPIPRLKP QPAAAAAAKV SKKPETKKGA EGKSKTKTKK 180 VASVSLLGLL FVALVFGAFV PGFNHNFGMS GRSDNIMFRN VGHSDARVFS VTNHVKGSRA 240 GLNSSDMIST DPGTMKGDTG GAEQKHQPAH NSSEILPALL YVPRNGKHVK INGNLIIHSV 300 LASEKAVAHK ASNGNGNQSV KDRKETSVAI ARYLSPPGKD TSSQETSPAD APLPQWFREG 360 MEGPILNSGM CSEVFQFDIS AASASPGGII PASPIVNSSA NATEKIPTPA PAGGKLKNRR 420 IMYNEAIPLT GKTVNGTEPR SFNRTSESSK LPDTDRKPAS SVVVSVLADP REAGNGDGDP 480 RVSPKPLSRI FVVVLLDGVR YVTYSCTLPF KGAGPHLVN

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

GAKCRRSGDG ELSPSASASA SASRAAAEGS EERDAVGEEE DPRRAARLMR NRESAQLSRQ  60
RKKKYVEELE EKVKSMHSVI NDLNSRISFV VAENATLRQQ LGNGSGNCPP PGVVYPPAPL  120
PGMPFPWVPG YAMRPHSSQV PLVPIPRLKP QPAAAAAAKV SKKPETKKGA EGKSKTKTKK  180
VASVSLLGLL FVALVFGAFV PGFNHNFGMS GRSDNIMFRN VGHSDARVFS VTNHVKGSRA  240
GLNSSDMIST DPGTMKGDTG GAEQKHQPAH NSSEILPALL YVPRNGKHVK INGNLIIHSV  300
LASEKAVAHK ASNGNGNQSV KDRKETSVAI ARYLSPPGKD TSSQETSPAD APLPQWFREG  360
MEGPILNSGM CSEVFQFDIS AASASPGGII PASPIVNSSA NATEKIPTPA PAGGKLKNRR  420
IMYNEAIPLT GKTVNGTEPR SFNRTSESSK LPDTDRKPAS SVVVSVLADP REAGNGDGDP  480
RVSPKPLSRI FVVVLLDGVR YVTYSCTLPF KGAGPHLVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462888400

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441096.1	0.0	bZIP transcription factor 39
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A0A9JME2	0.0	A0A0A9JME2_ARUDO; Uncharacterized protein
STRING	Sb09g020320.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-79	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]