PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462888256 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | YABBY | ||||||||
Protein Properties | Length: 171aa MW: 17876.6 Da PI: 7.2855 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 85.1 | 2e-26 | 21 | 126 | 5 | 100 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee.........lleelkveeenlksnvekeesa 92 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl + +a+++l+ ++ ll+el + +l + + ++ + 462888256 21 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLCGLLlppAAPPANNQLNF--GQSllsptsphgLLDELALQAPSLLMEQAASANL 118 578*******************************************998855555566666543..2222334677777777777777776666665554 PP YABBY 93 stsvssek 100 s+ ++ + 462888256 119 SSITNRSY 126 44333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-27 | 22 | 119 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MMSSSSSSSG TAFPLDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLFKT VTVRCGHCAN 60 LLSVNLCGLL LPPAAPPANN QLNFGQSLLS PTSPHGLLDE LALQAPSLLM EQAASANLSS 120 ITNRSYSSCA SNVPAAAPMP PVKLPVQREP PELPTKSAPS VNRRKDLIPF P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462888256 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 1e-120 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 1e-120 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155220.1 | 2e-73 | protein YABBY 4-like isoform X1 | ||||
Swissprot | A2X7Q3 | 1e-62 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-62 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3B6QIL1 | 4e-72 | A0A3B6QIL1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P643 | 4e-72 | A0A453P643_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453P657 | 2e-72 | A0A453P657_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_59DB06B9F.1 | 7e-73 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 1e-19 | YABBY family protein |
Publications ? help Back to Top | |||
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