PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YB | ||||||||
Protein Properties | Length: 184aa MW: 19793.5 Da PI: 4.4877 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 80.3 | 2.5e-25 | 22 | 107 | 6 | 91 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +Pi+ ++r+m++v+P n+ki d+ke + +cvsef + + ea + ++++ r ++gdd++ al+ lGf dyv+pl+++l++y 462887568 22 TKIPISILARLMHHVMPLNTKINMDTKEAMSQCVSEFAAVLIREARQVAREDSRVVVSGDDIISALGRLGFSDYVAPLSLFLRRYC 107 579**********************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.9E-24 | 19 | 111 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-9 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.04E-18 | 24 | 109 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEGNQAHDNN MPEGTEAVEE ITKIPISILA RLMHHVMPLN TKINMDTKEA MSQCVSEFAA 60 VLIREARQVA REDSRVVVSG DDIISALGRL GFSDYVAPLS LFLRRYCVSQ GIVPRGWKAE 120 LSQQAPSSAV AAAPVEIQQQ PEPDLTLGLA LPGPSDVTEL GMNENVYKLW PGAAGSMPPA 180 GGDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-18 | 24 | 106 | 13 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887568 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 6e-22 | nuclear factor Y, subunit B5 |