PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462887224

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 262aa MW: 29005.7 Da PI: 9.2375

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462887224	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ + lG+g+W+ I++ + ++Rt+ q+ s+ qky 462887224 98 PWTEEEHRKFLDGLRHLGKGDWRGISKSFVTTRTATQVASHAQKY 142 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.965	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-18	92	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-18	94	146	IPR006447	Myb domain, plants
SMART	SM00717	8.4E-10	95	145	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-11	96	141	IPR009057	Homeodomain-like
CDD	cd00167	1.09E-9	98	143	No hit	No description
Pfam	PF00249	4.5E-12	98	142	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MERRPDEEEE RRKAAPMIFR LFGKDLHVPG EEMDEEDDGE HPKELKKSTS MPNLITSVNK 60 SSALEEAGKK YASDDLDLAT PQQKRRRRKA QERKKGIPWT EEEHRKFLDG LRHLGKGDWR 120 GISKSFVTTR TATQVASHAQ KYFLRQTNPG KKKRRASLFD VGMADYNKND QVPSPQSIAT 180 KPAPTEEIIH TDRGDVPIPS YPGAGELLGG NVQAHGETSF GSMPYGLETA SSISSLELSM 240 AVNSLDLSIA PPRGAAGAIK VL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	88	KRRRRK
2	83	94	KRRRRKAQERKK
3	84	94	RRRRKAQERKK
4	150	154	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462887224

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251610	1e-85	AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.
GenBank	AK362457	1e-85	AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10.
GenBank	AK370274	1e-85	AK370274.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108A12.
GenBank	AK373165	1e-85	AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	1e-115	transcription factor MYBS2
Swissprot	B8BI93	6e-82	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	6e-82	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-131	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	Si036966m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	2e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]