PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887101
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 542aa    MW: 59080.3 Da    PI: 10.5616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887101genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05628123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  462887101  6 FVCEVCNKGFQREQNLQLHRRGH 28
               89*******************88 PP
2zf-C2H210.80.001683102120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                +kC +C+k++  +s+ k H 
  462887101  83 WKCDKCSKRYAVQSDWKAHS 102
                58*****************6 PP
3zf-C2H217.31.3e-05124146123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  462887101 124 FVCEVCNKGFQREQNLQLHRRGH 146
                89*******************88 PP
4zf-C2H211.70.00078201223123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H + +
  462887101 201 WKCDKCSKRYAVQSDWKAHSKIC 223
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-7528No hitNo description
PROSITE profilePS5015711.094628IPR007087Zinc finger, C2H2
SMARTSM003550.0041628IPR015880Zinc finger, C2H2-like
PfamPF121713.5E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-778103No hitNo description
SMARTSM0035514083103IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-6123146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-7123146No hitNo description
SMARTSM003550.0041124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094124146IPR007087Zinc finger, C2H2
PfamPF121713.5E-5124146IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4189222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-7196221No hitNo description
SMARTSM00355140201221IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPL QAQRRRVYLC PEPTCVHHDP  60
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKIYPDAEV IALSPKTLMA  120
TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNPLQA QRRRVYLCPE PTCVHHDPSR  180
ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KICGTREYRC DCGTLFSRRD  240
SFITHRAFCD ALAQESARLP PTSLSSLTSH LYGHGGPSAG NMALSLSQVG SHLTSTLGHD  300
GHHHHPSPEL LRLGRAPRPP PLAIRRLVGL PLAAVVGRQL LPQCGGPGLR RRSRRGQRRA  360
PPLAGLYNND QAAAAAGMLP QMSATALLQK AAQMGATSSS NSGAAASMFR GFAGASSPHV  420
RPAASHMEQQ QQSEANLNDL MNSLAGAGGM FGVGGNGGAG MFDPRQLCGD MDGREVKFGQ  480
GGGDMTRDFL GVGGGGIVQH GISTPRGGGG GGGGDHQSSS DMSSLEAEMN KSASSFNGGR  540
MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34197263369Zinc finger protein JACKDAW
5b3h_F9e-34197263369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887101
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548660.0AY754866.1 Zea mays INDETERMINATE-related protein 9 mRNA, complete cds.
GenBankBT0641200.0BT064120.1 Zea mays full-length cDNA clone ZM_BFc0139A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691544.11e-148PREDICTED: protein indeterminate-domain 13-like
SwissprotQ8GYC11e-107IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A446WGS81e-155A0A446WGS8_TRITD; Uncharacterized protein
STRINGTraes_2BL_58A855C7B.21e-139(Triticum aestivum)
STRINGTraes_2DL_540050272.21e-139(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.14e-98indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]