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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462886692 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
TALE |
| Protein Properties |
Length: 293aa MW: 31816.8 Da PI: 6.9792 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462886692 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 30.4 | 6.5e-10 | 219 | 254 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+++gL+++q+ +WF N+R ++
462886692 219 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 254
4679*****************************885 PP
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| 2 | ELK | 38.1 | 3.2e-13 | 174 | 195 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLl+KYsgyL+sL+qEFs
462886692 174 ELKYQLLKKYSGYLSSLRQEFS 195
9********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MDHSFGNLGG SSSGGSNSKA AAPASSSSFL QLPLSSAAAT GGGGGVAYYG APLALLHHAA 60
GPSSSSSLYG RHAEISPAEA DAIKAKIAPR LPEILLYREE LTRPIEEAMD FLKRVEAQLD 120
TISGAAAVGG GGGAARLLLT DGKSEGVGSS EDDMDTSGRE NEPPEIDPRA EDKELKYQLL 180
KKYSGYLSSL RQEFSKKKKK GKLPKEARQK LLHWWELHYK WPYPSETEKI ALAESTGLDQ 240
KQINNWFINQ RKRHWKPSED MPFVMMEGFH PQNAAALYMD GPFMADGMYR LGS
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB016071 | 0.0 | AB016071.1 Oryza sativa Japonica Group mRNA, complete cds. |
| GenBank | AK111877 | 0.0 | AK111877.1 Oryza sativa Japonica Group cDNA clone:J033044D23, full insert sequence. |
| GenBank | FJ940208 | 0.0 | FJ940208.1 Oryza sativa Japonica Group clone KCB937E04 homeobox protein mRNA, complete cds. |
| Publications
? help Back to Top |
- Sato Y, et al.
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
EMBO J., 1999. 18(4): p. 992-1002
[PMID:10022841] - Ito Y,Eiguchi M,Kurata N
KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
Genesis, 2001. 30(4): p. 231-8
[PMID:11536429] - Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
Plant Cell, 2001. 13(9): p. 2085-98
[PMID:11549765] - Postma-Haarsma AD, et al.
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Plant Mol. Biol., 2002. 48(4): p. 423-41
[PMID:11908517] - Kuijt SJ, et al.
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Plant Mol. Biol., 2004. 55(6): p. 781-96
[PMID:15604716] - Yin H, et al.
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
Planta, 2013. 237(1): p. 15-27
[PMID:22956125]
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