PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462886641

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 172aa MW: 18527.6 Da PI: 8.7417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462886641	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8.3e-07	3	31	22	55
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 +L++l+P++ K +Ka++L ++++Y+k+Lq 462886641 3 TLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 31 799999997.....7******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.049	1	30	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-10	1	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-8	1	35	No hit	No description
SuperFamily	SSF47459	8.77E-11	1	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKTLQKLVPN SSKTDKASML DEVIDYLKQL QAQVQTMSRM SSMMMPMAMP PLQMSVMAQM 60 AQMAQMAQMA QGMMNMGSLA QPGFAPPMMH PPPFIPMPWD ATGPSSGAGA AADRAPQPGG 120 TAVPDAFAAF LACQQAQQNG QQQQGSMEAY NKMLAMCQKL NQQQGQPSNP KQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462886641

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361420	2e-70	AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBank	AK367814	2e-70	AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008658346.1	1e-46	transcription factor UNE10 isoform X3
Refseq	XP_015697075.1	3e-47	PREDICTED: transcription factor UNE10-like
TrEMBL	A0A0E0IWC9	2e-50	A0A0E0IWC9_ORYNI; Uncharacterized protein
STRING	ONIVA10G20730.1	8e-48	(Oryza nivara)
STRING	LPERR10G14070.1	7e-48	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7474	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-15	bHLH family protein