PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 253aa MW: 27019.6 Da PI: 5.7898 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 138 | 1e-42 | 49 | 231 | 24 | 202 |
GRAS 24 Larlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd.. 118 a++ +las d ++qRlaa+f+ ALa++l++ v++l++al +s++s+ + + e a++ +++ P++k+++lt+N+aIlea+ege+ vH++D++ 462886572 49 AAEITQLASLDSpHTLQRLAAVFADALARKLLNLVPGLSRALLMSSSSSASisGAAEQEARRHVFDMLPFMKLAYLTTNHAILEAMEGERFVHVVDLSgp 148 57899999999999****************************777777666667788899999**********************************966 PP GRAS 119 isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEal 202 +++QW+aL++a+ R++gpp+lR+T+v++ s+e l +++ La+ Ae++++pf+f+ v+ rle++e ++L rv++gEal 462886572 149 CANPVQWIALFHAFRGRRGGPPHLRVTAVHE----SREFLGNMAGVLAREAEAFDIPFQFDG-VEARLEEMEADALrhslRVRSGEAL 231 799****************************....9**************************.7999999988777333366668876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.415 | 1 | 253 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-40 | 49 | 231 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLQDDVVSSA TSSTLYSPSA AHGYGGSWVQ ELSQDQQSVR LVGLLYQCAA EITQLASLDS 60 PHTLQRLAAV FADALARKLL NLVPGLSRAL LMSSSSSASI SGAAEQEARR HVFDMLPFMK 120 LAYLTTNHAI LEAMEGERFV HVVDLSGPCA NPVQWIALFH AFRGRRGGPP HLRVTAVHES 180 REFLGNMAGV LAREAEAFDI PFQFDGVEAR LEEMEADALR HSLRVRSGEA LGPASSPPTT 240 LPGVGAGTAE AAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-19 | 29 | 231 | 7 | 215 | Protein SCARECROW |
5b3h_A | 8e-19 | 29 | 231 | 6 | 214 | Protein SCARECROW |
5b3h_D | 8e-19 | 29 | 231 | 6 | 214 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886572 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068885 | 1e-41 | BT068885.1 Zea mays full-length cDNA clone ZM_BFc0155C10 mRNA, complete cds. | |||
GenBank | EU975039 | 1e-41 | EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728001 | 1e-41 | KJ728001.1 Zea mays clone pUT6130 GRAS transcription factor (GRAS29) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703080.1 | 1e-115 | scarecrow-like protein 3 | ||||
TrEMBL | A0A1E5WC05 | 1e-115 | A0A1E5WC05_9POAL; Scarecrow-like protein 3 (Fragment) | ||||
TrEMBL | K3Y6U2 | 1e-114 | K3Y6U2_SETIT; Uncharacterized protein | ||||
STRING | Si009933m | 1e-115 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-45 | scarecrow-like 3 |