PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886376
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 874aa    MW: 99044 Da    PI: 9.2827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886376genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00082645668122
                EEET..TTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                ykC+   C++sF +k +L  H r 
  462886376 645 YKCNidGCSMSFDTKQELSLHKRD 668
                99*******************985 PP
2zf-C2H211.70.00082757780122
                EEET..TTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                ykC+   C++sF +k +L  H r 
  462886376 757 YKCNidGCSMSFDTKQELSLHKRD 780
                99*******************985 PP
3zf-C2H211.40.00097840866123
                EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                y+C+   C ++F+  s++ rH r+  H
  462886376 840 YVCHepGCQQTFRFVSDFSRHKRRtgH 866
                99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005589.4E-2924172IPR003347JmjC domain
PROSITE profilePS5118425.36327172IPR003347JmjC domain
SuperFamilySSF511973.3E-1738170No hitNo description
PfamPF023733.0E-2157155IPR003347JmjC domain
Gene3DG3DSA:3.30.160.603.2E-5637667IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558645667IPR015880Zinc finger, C2H2-like
SMARTSM00355200668690IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5749779IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558757779IPR015880Zinc finger, C2H2-like
SMARTSM003553.4780804IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.157780809IPR007087Zinc finger, C2H2
PROSITE patternPS000280782804IPR007087Zinc finger, C2H2
SuperFamilySSF576676.3E-10796838No hitNo description
Gene3DG3DSA:3.30.160.608.7E-10808834IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.071810839IPR007087Zinc finger, C2H2
SMARTSM003556.9E-4810834IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280812834IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8828863No hitNo description
Gene3DG3DSA:3.30.160.601.2E-9835862IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.8840866IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704840871IPR007087Zinc finger, C2H2
PROSITE patternPS000280842866IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MPGSGFVPCA GRPRQQSAAA AQVNVGDTEW NMPGVARSPG SLLRFLREEV PGVTTPMLYV  60
AMMFSWFAWH VEDHDLRGTG CRETLRSRSR RWCASMETFA MLGNKTTVMS PEVLVESGIP  120
CCRLVQNAGE FVVTFPGAYH SGFSHGFNCA EASNIATPEW LRVAKEAAVR RASINRPPMV  180
SHYQLLYELA MSMCVSSTTT MNVIPNVKPD KDSSRMHVFC LEHAAEVEKQ LQTIGGSHIV  240
LLCRPEYPKI EAEARLLAKE MEAEYDWKDI HFREASMEDR EQIQEVVRDE ETIPTSSDWA  300
VKLGINLYYS ANLAKSPLYN KQLPYNRVIY KAFGCNSPNN SPVKLKTYAR SQGRQKRVVL  360
AGHWCGKVWM SNQVHPYLAD RSENQEPEET YEICSSHLDK KTKGEPVENS TREAASTGKS  420
NNRAVEEKTS NMEQEPVEKT NTKKPKRTEE HNSKVSESDI VYTRKSSSRT VVEQASDMDK  480
EPVNEANTEK PKYTEEDNSR GLKGAAEASC LLPTGVVLRS STRIANRKNK LKSKMEEEDN  540
DPASHLKSVV KEGKDGPASN LRARSPSQKA EVDTKKQLKE TRGQKRKTPS ATDEEGPSDA  600
KGCSANSDRK QQLSVCKQTN KVEAKQETKR GKRRAPSAPE KEEEYKCNID GCSMSFDTKQ  660
ELSLHKRDIC PMKGCQKKFF SHKYLLQHRK ETRGQKRKTP SATDEEEPPS DAKGCSANSD  720
RKQQLSVCKQ TNKVEAKQET KRGKRRAPSA PEKEEEYKCN IDGCSMSFDT KQELSLHKRD  780
ICPMKGCQKK FFSHKYLLQH RKVHADDRPL KCSWKGCNMA FKWQWARTEH MRVHTGDRPY  840
VCHEPGCQQT FRFVSDFSRH KRRTGHLDKL KTKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-5764586623132Lysine-specific demethylase REF6
6a58_A3e-5764586623132Lysine-specific demethylase REF6
6a59_A3e-5764586623132Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886376
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815151.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7121e-128JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0A9DU020.0A0A0A9DU02_ARUDO; Uncharacterized protein
STRINGPavir.J31927.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-74relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]