PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885151
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 570aa    MW: 64288.1 Da    PI: 6.4044
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885151genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.91.1e-1282015692373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cAea+s++  e+ ++l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al++se +   s e l+++k++++++P++kf++++aN a
  462885151 201 KQLLTRCAEALSEERIEEFHKLVQEARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCSEPK---SNELLSYMKILYNICPYFKFGYMAANGA 297
                689*****************************************************************9...99************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l     + ++ e+L+++pg
  462885151 298 IAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEfaRGEGLDIVGKMLKSMSEEFKIPLEFTPL-PVYATRVTKEMLEIRPG 396
                *************************************************99999***************************6.77788999********* PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                Ea+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+++r++++ri+vE+++l+++ivn++a
  462885151 397 EAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFAETMDYYSAMFESIDANMARDKKDRINVEQHCLAKDIVNIIA 496
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                ceg++r+erhe l+kW++rl++aGF+p+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  462885151 497 CEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 569
                *******************************************999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.756174551IPR005202Transcription factor GRAS
PfamPF035143.6E-126201569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDLQQLLKYR LTCPNVFYEI PTENNLANSP WPASPLKSEF SNSPYTPLSS QLECDNLSAL  60
SNTPDNQSST ETISAQAISP LEADSSYRQA GIILQENIQV RPDPLYATSR HNMQHALREI  120
ETVLMAPDAD DGATGTKHEI EENKPAQLMR QRSRTCSHES RQPSPGVVWP QFASGFPSAS  180
YEFRPEKRQR ELREDPQNIV KQLLTRCAEA LSEERIEEFH KLVQEARGVV SITGEPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCSEPKS NELLSYMKIL YNICPYFKFG YMAANGAIAE  300
ALRNEDRIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEF ARGEGLDIVG  360
KMLKSMSEEF KIPLEFTPLP VYATRVTKEM LEIRPGEAVA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFAETMDY YSAMFESIDA NMARDKKDRI  480
NVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLTMAG FRPYPLSSYV NSVIKKLLAC  540
YSDKYTLEEK DGAMLLGWKN RKLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-701845693378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885151
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800433.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2T7EX230.0A0A2T7EX23_9POAL; Uncharacterized protein
STRINGSb02g035680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]