PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462884384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 307aa MW: 34399.8 Da PI: 4.5706 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f t+e+Aa+a++ +++++g 462884384 92 QYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEDAARAYDVEARRIRG 141 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 92 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-22 | 92 | 149 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.25 | 92 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.87E-30 | 92 | 149 | No hit | No description |
SMART | SM00380 | 2.8E-35 | 92 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 93 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MCGGAILSDL YSPVRQAVTA GDLWADSGKS KNGKNRKGKS SWEFDEDDSD DFEADFEEFQ 60 DGDSEEEVDF VHHDKEFQIK SSKFGSRKRK NQYRGIRRRP WGKWAAEIRD PRKGVRVWLG 120 TFNTPEDAAR AYDVEARRIR GKKAKVNFPG TISKTKRRHP GPVARTAEKS NNFSYHVSSA 180 GSSTDLTVVK LELTESLPLP ISRAGLDALD LSQVDGLRYL EDAGKDAVGE FDGEAGEEDM 240 VCANAEVKLA DDFAYYEAYS NYMQLPYLEG NSYENIDALF DGEAVQDGVN VGGLWSFDDM 300 PMDQTFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 92 | 149 | 5 | 63 | ATERF1 |
3gcc_A | 1e-19 | 92 | 149 | 5 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462884384 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698773.1 | 1e-131 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A1E5WNS8 | 1e-138 | A0A1E5WNS8_9POAL; Ethylene-responsive transcription factor 1 | ||||
STRING | Pavir.Ba00410.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14560 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 4e-38 | ERF family protein |