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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462883206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 29498.6 Da PI: 7.0547 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.2e-13 | 86 | 136 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h ++Er+RR+++N+ ++ Lr+l+P k+ + a+i +v+YIk+Lq 462883206 86 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---FVKRGDQASIIGGVVDYIKELQ 136 789*************************8...89*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.89E-14 | 82 | 140 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-17 | 83 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 84 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.37 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-11 | 86 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-12 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGDGGLCELR HVSDAEDLFS ILETWEGCMN GAPAGGGGGA AVAAAFCQNC RRRSADEAAK 60 GAPVHKKQKS SSAPAPDSAD DDGEAKMSHI AVERNRRKQM NEHLAVLRSL MPCFFVKRGD 120 QASIIGGVVD YIKELQQLLR SLEAKKHRKT YADQSPPPPP AAAAAYMASP AMTPTTSSSS 180 SSYHDQQQHF PQPYLPTLDS IMTELAAHAA RPGALAIPDV KVEFAGPNLV LKTVSRRAPG 240 QALKIIAALE SLELEILHVS VSTVDDTMMH SFTIKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462883206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975896 | 8e-68 | EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799200.1 | 1e-111 | transcription factor SPEECHLESS-like | ||||
TrEMBL | A0A0A9TXQ3 | 1e-115 | A0A0A9TXQ3_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ab01030.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 6e-37 | bHLH family protein |