PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462883206

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 276aa MW: 29498.6 Da PI: 7.0547

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462883206	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.2e-13	86	136	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h ++Er+RR+++N+ ++ Lr+l+P k+ + a+i +v+YIk+Lq 462883206 86 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---FVKRGDQASIIGGVVDYIKELQ 136 789***********************8...89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.89E-14	82	140	No hit	No description
SuperFamily	SSF47459	3.01E-17	83	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	84	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.37	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-11	86	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-12	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGDGGLCELR HVSDAEDLFS ILETWEGCMN GAPAGGGGGA AVAAAFCQNC RRRSADEAAK 60 GAPVHKKQKS SSAPAPDSAD DDGEAKMSHI AVERNRRKQM NEHLAVLRSL MPCFFVKRGD 120 QASIIGGVVD YIKELQQLLR SLEAKKHRKT YADQSPPPPP AAAAAYMASP AMTPTTSSSS 180 SSYHDQQQHF PQPYLPTLDS IMTELAAHAA RPGALAIPDV KVEFAGPNLV LKTVSRRAPG 240 QALKIIAALE SLELEILHVS VSTVDDTMMH SFTIKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462883206

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975896	8e-68	EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799200.1	1e-111	transcription factor SPEECHLESS-like
TrEMBL	A0A0A9TXQ3	1e-115	A0A0A9TXQ3_ARUDO; Uncharacterized protein
STRING	Pavir.Ab01030.1.p	1e-110	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3484	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	6e-37	bHLH family protein