PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882766
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 267aa    MW: 29437.1 Da    PI: 8.487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882766genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-11217240226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ktelC+ + r G C+y +rC+FaHg
  462882766 217 KTELCNKWER-GACPYAGRCRFAHG 240
                9*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-15211247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-8215246IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-7215241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042215242IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-8217240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
FSPPTGASSL ETQLKSPSSC ISDSRGGGNG SGFSSTTRAS PLERRPSSPS SCVSDVHSGG  60
NSSSLRVSKE REREVQEAEK LLYAITERYN DCFLRLRDAT AELVELRHER VRLRAENLQL  120
SLLLAELEAE QSKQASAVAL TPPPKPVHSL QTEAAFECAP KSISIRSKGF LSQQQPQGES  180
KEQRLRVRTS LAVEEAGEKG KEDGQVEFEA YRQGALKTEL CNKWERGACP YAGRCRFAHG  240
VQELRPVIRH PRYKTLLCQM FISPSGC
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679282.11e-108putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN86e-89C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLK4AKT51e-107K4AKT5_SETIT; Uncharacterized protein
STRINGSi039512m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-28C3H family protein