PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462882766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 267aa MW: 29437.1 Da PI: 8.487 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 217 | 240 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + r G C+y +rC+FaHg 462882766 217 KTELCNKWER-GACPYAGRCRFAHG 240 9*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-15 | 211 | 247 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-8 | 215 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-7 | 215 | 241 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-8 | 217 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
FSPPTGASSL ETQLKSPSSC ISDSRGGGNG SGFSSTTRAS PLERRPSSPS SCVSDVHSGG 60 NSSSLRVSKE REREVQEAEK LLYAITERYN DCFLRLRDAT AELVELRHER VRLRAENLQL 120 SLLLAELEAE QSKQASAVAL TPPPKPVHSL QTEAAFECAP KSISIRSKGF LSQQQPQGES 180 KEQRLRVRTS LAVEEAGEKG KEDGQVEFEA YRQGALKTEL CNKWERGACP YAGRCRFAHG 240 VQELRPVIRH PRYKTLLCQM FISPSGC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462882766 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679282.1 | 1e-108 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 6e-89 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | K4AKT5 | 1e-107 | K4AKT5_SETIT; Uncharacterized protein | ||||
STRING | Si039512m | 1e-107 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12143 | 32 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-28 | C3H family protein |