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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462882598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 26364 Da PI: 9.717 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.9e-06 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H 462882598 121 FVCEICGKGFQRDQNLQLHRRGH 143 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.48E-6 | 120 | 143 | No hit | No description |
SMART | SM00355 | 0.012 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-6 | 121 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 121 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 164 | 194 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.48E-6 | 194 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MQVLPQQIAH PSLPIYDPLA KIQVRDQAKQ APSASLAAVH LMFHHHHQQQ LLQEQAAEAA 60 ADQDSGMSNL TSSASGPNNP PPPAPAASAG NKRKRSLPGN PDPDAEVVAL SPATLMATNR 120 FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAPR KKVYVCPEAS CVHHDPARAL 180 GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV SDPSMAISFS HFTLFLDDDP SIHGSLTKDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462882598 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956926 | 1e-145 | EU956926.1 Zea mays clone 1577561 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969529.1 | 2e-89 | protein indeterminate-domain 7 | ||||
Swissprot | Q9LRW7 | 6e-72 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | K3XHB6 | 5e-88 | K3XHB6_SETIT; Uncharacterized protein | ||||
STRING | Si001287m | 8e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-62 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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