PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462882426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | G2-like | ||||||||
Protein Properties | Length: 164aa MW: 18670.2 Da PI: 11.8379 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.3 | 3e-32 | 23 | 76 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ 462882426 23 PRLRWTPDLHMAFVNAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 76 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.336 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 19 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-14 | 22 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 23 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 24 | 75 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
SKAEGSGEQR VPSVRQYNRS KLPRLRWTPD LHMAFVNAVE RLGGQERATP KLVLQMMNVR 60 GLSIAHVKSH LQMYRSKKLD QDGRPRGSIS SVYSPMDFHF MRDGRFHGMS FLQRAAALSS 120 SGPEHGGFFA SRNGSRPEVS RLYGLLHHRQ PQMQSLDFRS SSFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-20 | 24 | 76 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-20 | 24 | 76 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-20 | 24 | 76 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-20 | 24 | 76 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-20 | 24 | 76 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462882426 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824409.1 | 1e-93 | uncharacterized protein LOC112899951 isoform X1 | ||||
Refseq | XP_025824416.1 | 1e-93 | uncharacterized protein LOC112899951 isoform X2 | ||||
TrEMBL | A0A2T7F456 | 1e-92 | A0A2T7F456_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab01097.1.p | 2e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-36 | G2-like family protein |