PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HD-ZIP

Protein Properties

Length: 166aa MW: 18992.5 Da PI: 9.1084

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462882144	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.2e-20	28	82	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +f++eq++ Le++F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k 462882144 28 RNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 82 67789*************************************************9 PP
2	HD-ZIP_I/II	124.5	5.1e-40	29	118	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k+r+s+eq+k+LE++F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L +++ 462882144 29 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQV 118 79************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-19	12	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-20	23	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	24	84	IPR001356	Homeobox domain
SMART	SM00389	4.1E-16	27	88	IPR001356	Homeobox domain
CDD	cd00086	9.66E-16	28	85	No hit	No description
Pfam	PF00046	3.1E-17	28	82	IPR001356	Homeobox domain
PRINTS	PR00031	8.4E-6	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.4E-6	64	80	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.9E-13	84	118	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MEGDEDGPEW MMDVGGPGGG KGKGGVDRNK KRFSEEQIKS LESMFATQTK LEPRQKLQLA 60 RDLGLQPRQV AIWFQNKRAR WKSKQLEREY SALRDDYDAL LCSYESLKKE KHALLKQVGT 120 VASHGHGDHH HVAAFLLFWS FAVSEDHHRL LHSVAYSDRS LAIRCF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462882144

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087258	1e-120	BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957433.1	4e-63	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	8e-56	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	8e-56	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	K3ZWK1	1e-61	K3ZWK1_SETIT; Uncharacterized protein
STRING	Si030983m	2e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-41	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]