PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882118
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 348aa    MW: 36871.4 Da    PI: 5.0855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882118genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-09164211455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  462882118 164 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 211
                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.75E-10158215No hitNo description
SuperFamilySSF474596.28E-17158229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-17160228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSDYVTSLL MGACTPGLDF GALDGGFLDT LCGGGGGGGL FVPPGVVPPG GGADSREGSS  60
VSDPAWARSR DGGNARKRKA PAAKVAYGVG LQVGEAKGGP ESKKCKVGGG DSPVKPKVEE  120
ATASDGSVVD KGTKQGKGKS SKPAVEPPKD YVHVRARRGQ ATDSHSLAER VRREKISQRM  180
KFLQDLVPGC NKVVGKALML DEIINYVQSL QQQVEFLSMK LATVNPQLDF SNLPTLLHKD  240
MYQACGPSQS SVFPLESAGA AFPFCDQPDL FQSFGAGAME DQCSLSLLDT ALPHTTNPQF  300
AFQKQQRDFW EDGLQNALPM GNEQIQDDGV SAPSFDGQLQ VDDTKIEF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804696.10.0transcription factor BHLH089-like
TrEMBLA0A3L6QSR40.0A0A3L6QSR4_PANMI; Transcription factor bHLH49-like
TrEMBLA0A3L6TFE20.0A0A3L6TFE2_PANMI; Transcription factor bHLH49-like
STRINGPavir.Ba01626.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-54bHLH family protein