PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882062
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 386aa    MW: 40840.9 Da    PI: 9.7958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882062genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-066183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F r  nL+ H r H
  462882062 61 FVCEVCNKGFQREQNLQLHRRGH 83
               89*******************88 PP
2zf-C2H213.80.00018138160123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  462882062 138 WKCDKCNKRYAVQSDWKAHSKTC 160
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-66083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-76083No hitNo description
PfamPF121712.3E-56183IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00416183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0946183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355300103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-7133158No hitNo description
SMARTSM00355110138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAASAHLFGG LGDALQGAPP AAPPAATTPA PKKKRNQPGN PNPDAEVIAL SPRTLLATNR  60
FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKEAQRR RVYLCPEPTC VHHDPSRALG  120
DLTGIKKHYC RKHGEKKWKC DKCNKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI  180
THRAFCDALA QESARAPPIA AGMYGGSGGM ALGLSGMAAS HLQSAFHHDQ AHSAGAQFEH  240
LGSPAFRGAQ PTSSSSSPFF LGGADDGNTS LLHGKPAFHS LMQLPEQQGS NGMLNLGFFS  300
GATSAGQDAR LAAENESQFR DLMNSLAASG GAGGGAAFAG VDDGKLSTRD FLGVGGRNNM  360
NGGAAGLQMR HGAAAGVGMG SLEAQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35134200369Zinc finger protein JACKDAW
5b3h_F7e-35134200369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882062
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1011440.0FP101144.1 Phyllostachys edulis cDNA clone: bphyem208d18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649012.11e-177uncharacterized protein LOC542697 isoform X6
SwissprotQ8GYC11e-116IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1D6KMW91e-176A0A1D6KMW9_MAIZE; Indeterminate domain p1
STRINGGRMZM2G179677_P021e-174(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-112indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]