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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462881777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 28558.1 Da PI: 10.6245 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.8e-24 | 77 | 173 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsef 90 f k lt+sdv+k++rl +p+k ae++ gg+ + + l++ed++g +W ++++++++s+++vltkGW +Fvk+++L +gD+v F+ ++g++++ 462881777 77 FSKRLTKSDVGKLNRLLIPRKEAERFfptalgamGGD-ALP-FLIFEDSTGVTWHFRYTFWQSSKTFVLTKGWIRFVKEKKLSDGDTVFFYqRTGEDSK 173 8899****************************97555.566.6889*********************************************32243444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-29 | 74 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.83E-24 | 75 | 173 | No hit | No description |
SuperFamily | SSF101936 | 8.37E-25 | 76 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.689 | 77 | 183 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-20 | 77 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-14 | 77 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGIIIEIQAG SRLQKEREMQ GKQTPMMHQS LLSMVNPVLS PIYGAPSAPM SAPVSLSGGG 60 ASALLGGGQG VDMDFMFSKR LTKSDVGKLN RLLIPRKEAE RFFPTALGAM GGDALPFLIF 120 EDSTGVTWHF RYTFWQSSKT FVLTKGWIRF VKEKKLSDGD TVFFYQRTGE DSKTMHRYIY 180 FKKQDHISFV PHDVPPPSGT LLRKALISSS HYTTNLGWKP VSSRSMGATP ANMPILSPSF 240 VPQVPTLGSG LGPAKKRRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-29 | 71 | 184 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-29 | 71 | 184 | 2 | 113 | B3 domain-containing transcription factor NGA1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462881777 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16167 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 5e-31 | B3 family protein |