PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462881741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 191aa MW: 21917.1 Da PI: 8.2265 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 105 | 139 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yps+ e+ LA+ +gL+++q+ +WF N+R ++ 462881741 105 RWPYPSEMEKIALAEATGLEQKQINNWFINQRKRH 139 569*****************************885 PP | |||||||
2 | ELK | 34.6 | 4e-12 | 59 | 80 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLl+KY+gyLg+L++E++ 462881741 59 ELKRQLLKKYGGYLGNLRKELC 80 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 1.9E-9 | 59 | 80 | IPR005539 | ELK domain |
SMART | SM01188 | 2.6E-6 | 59 | 80 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 59 | 79 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.05 | 79 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-11 | 81 | 146 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-19 | 82 | 154 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 84 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.95E-11 | 91 | 141 | No hit | No description |
Pfam | PF05920 | 1.9E-16 | 99 | 138 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVILPKERKV ELNASGVWHT RKFSEEKAGL GSFDDDQDEG SGMEAEEDLG IDPCSDDKEL 60 KRQLLKKYGG YLGNLRKELC KKMKKGKLPK EARQKLPSWW ELHYRWPYPS EMEKIALAEA 120 TGLEQKQINN WFINQRKRHW KLSEEMQFAV MDGLLPAPQN AALYVDARVV GATPAMVFAR 180 PEHGAHALWH G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462881741 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964949 | 1e-145 | EU964949.1 Zea mays clone 282742 KNOX1 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149876.1 | 2e-85 | KNOX1 domain containing protein | ||||
Swissprot | O04134 | 4e-54 | KNAP1_MALDO; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0A8YSP5 | 3e-85 | A0A0A8YSP5_ARUDO; Uncharacterized protein | ||||
STRING | Sb01g009460.1 | 1e-83 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15063 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-42 | KNOTTED-like from Arabidopsis thaliana |