PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462881715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 350aa MW: 38683.5 Da PI: 6.7356 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 278 | 313 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+ +q+ +WF N+R ++ 462881715 278 YKWPYPSETQKVALAESTGLDLKQINNWFINQRKRH 313 5679*****************************885 PP | |||||||
2 | ELK | 37.2 | 6.4e-13 | 233 | 254 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+Ll+KYsgyL+sLkqE+s 462881715 233 ELKHHLLKKYSGYLSSLKQELS 254 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.2E-18 | 90 | 137 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.0E-20 | 91 | 136 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-26 | 144 | 195 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.4E-22 | 150 | 193 | IPR005541 | KNOX2 |
SMART | SM01188 | 570 | 153 | 173 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.331 | 233 | 253 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.9E-10 | 233 | 254 | IPR005539 | ELK domain |
SMART | SM01188 | 4.9E-7 | 233 | 254 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.487 | 253 | 316 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-19 | 254 | 328 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.2E-12 | 255 | 320 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-28 | 258 | 318 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.15E-12 | 265 | 317 | No hit | No description |
Pfam | PF05920 | 6.6E-17 | 273 | 312 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 291 | 314 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEEITHHFGV GASGHGHHHP WGSALSAVVA PPPSAGLPLT LNTAAATGNS GANSGGSNPV 60 LQLANGGGSL LDACAKEPSS SSPCYAGDVE AIKAKIISHP HYYSLLAAYL ECQKASPVGA 120 PPEVSARLTA MAQELEARQR TTLGGLGSAT EPELDQFMEA YHEMLVKFRE ELTRPLQEAM 180 EFMRRVESQL STLSITGRSL RHILSSGSSE EDQEGSGGET ELPEVDAHGV DQELKHHLLK 240 KYSGYLSSLK QELSKKKKKG KLPKEARQQL LLWWEQHYKW PYPSETQKVA LAESTGLDLK 300 QINNWFINQR KRHWKPSEEM HHLMMDGYHT TNAFYMDGHF FNEPGLYRFT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462881715 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ317421 | 0.0 | DQ317421.1 Chasmanthium latifolium KNOTTED1 homeodomain protein (KN1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981913.1 | 0.0 | homeotic protein knotted-1 | ||||
Swissprot | P24345 | 0.0 | KN1_MAIZE; Homeotic protein knotted-1 | ||||
TrEMBL | A0A0A9CTZ3 | 0.0 | A0A0A9CTZ3_ARUDO; Kn1 | ||||
STRING | GRMZM2G017087_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9886 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 3e-89 | KNOTTED-like from Arabidopsis thaliana |