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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462881715 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family |
TALE |
| Protein Properties |
Length: 350aa MW: 38683.5 Da PI: 6.7356 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462881715 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 26.1 | 1.5e-08 | 278 | 313 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++++ LA+++gL+ +q+ +WF N+R ++
462881715 278 YKWPYPSETQKVALAESTGLDLKQINNWFINQRKRH 313
5679*****************************885 PP
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| 2 | ELK | 37.2 | 6.4e-13 | 233 | 254 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELKh+Ll+KYsgyL+sLkqE+s
462881715 233 ELKHHLLKKYSGYLSSLKQELS 254
9*******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010089 | Biological Process | xylem development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MEEITHHFGV GASGHGHHHP WGSALSAVVA PPPSAGLPLT LNTAAATGNS GANSGGSNPV 60
LQLANGGGSL LDACAKEPSS SSPCYAGDVE AIKAKIISHP HYYSLLAAYL ECQKASPVGA 120
PPEVSARLTA MAQELEARQR TTLGGLGSAT EPELDQFMEA YHEMLVKFRE ELTRPLQEAM 180
EFMRRVESQL STLSITGRSL RHILSSGSSE EDQEGSGGET ELPEVDAHGV DQELKHHLLK 240
KYSGYLSSLK QELSKKKKKG KLPKEARQQL LLWWEQHYKW PYPSETQKVA LAESTGLDLK 300
QINNWFINQR KRHWKPSEEM HHLMMDGYHT TNAFYMDGHF FNEPGLYRFT
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| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ317421 | 0.0 | DQ317421.1 Chasmanthium latifolium KNOTTED1 homeodomain protein (KN1) mRNA, partial cds. |
| Publications
? help Back to Top |
- Lowe B,Mathern J,Hake S
Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
Genetics, 1992. 132(3): p. 813-22
[PMID:1334895] - Sinha N,Hake S
Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
Dev. Biol., 1990. 141(1): p. 203-10
[PMID:2391001] - Chen H,Jackson D,Kim JY
Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
Plant Signal Behav, 2014. 9(3): p. e28355
[PMID:24603432] - Sinha NR,Williams RE,Hake S
Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
Genes Dev., 1993. 7(5): p. 787-95
[PMID:7684007] - Greene B,Walko R,Hake S
Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
Genetics, 1994. 138(4): p. 1275-85
[PMID:7896105] - Mathern J,Hake S
Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
Genetics, 1997. 147(1): p. 305-14
[PMID:9286690]
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