PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880773
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 627aa    MW: 69471.6 Da    PI: 7.8318
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880773genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.73.5e-27115202190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t++  +HnH+la
  462880773 115 EFYNAYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPASMTIRLTANGKYRLTEFIPNHNHQLA 202
                6********************97766.****************9999.999*************************************97 PP
2FAR184.71.5e-26244330189
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                +fY+ YA ++GFsvrk++++ +  ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++  +gk++vt++++ HnH+l
  462880773 244 EFYSMYAGKIGFSVRKASMTVN-AENVITRRMFVCSKEGFREKKRGA-KRVQKPRPETRTGCPACMVIRLAANGKYHVTEFVTFHNHQL 330
                6****************99998.5566****************9998.999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-24115202IPR004330FAR1 DNA binding domain
PfamPF031014.4E-23244330IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.67440487IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-7457485IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-6462489IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MPSGSENDPQ FTPGSVAAPS LVQTFRPAHA TGGAAADPRL SQQSWPGHVA LLRPCAPWPP  60
HAPVPLMLNT GNPPKNGDAG ADVAAADVNP AIDSCDENML PKINMLFDGE NDAYEFYNAY  120
AEKVGFFVRR STLWTTSKNI ITRRTFVCSR EGFREKKKGA KEAKCPRPET RIGCPASMTI  180
RLTANGKYRL TEFIPNHNHQ LATTSTINML KAKKIRRKAR AVREHLVDDT VRTPEFENED  240
EAYEFYSMYA GKIGFSVRKA SMTVNAENVI TRRMFVCSKE GFREKKRGAK RVQKPRPETR  300
TGCPACMVIR LAANGKYHVT EFVTFHNHQL GAAAASDLVL ASQSAENDQD DGVDLLDGSP  360
DDSIHKQNCI NEKATGYTPE ELEADVNANQ GTKKPPPMRI LRQAANVYTP AAFKMFEREF  420
ELYMDCLLYS CGEVGTISEY RVCVEDNPKG HIVKFDSINA TVNCSCKTFE FMGIPCRHML  480
KVLDNRNIKD LPTQYILKRW RKDAKSGSRN GNYAFSFEGD PESAQAKCYN SLCRTFSIAA  540
ARAATCMESF AYMENQSSIL MDQIEQVIQT RPPDISAFMS ANCDQTENSV DNIVTGGIHS  600
HANFINGSAD GSLTFPFTLG AGALDFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880773
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460862.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0A9SDT00.0A0A0A9SDT0_ARUDO; Uncharacterized protein
STRINGPavir.Bb03075.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-22far-red elongated hypocotyls 3